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dc.contributor.authorZheng, Yi
dc.contributor.authorWu, Shan
dc.contributor.authorBai, Yang
dc.contributor.authorSun, Honghe
dc.contributor.authorJiao, Chen
dc.contributor.authorGuo, Shaogui
dc.contributor.authorZhao, Kun
dc.contributor.authorBlanca, Jose
dc.contributor.authorZhang, Zhonghua
dc.contributor.authorHuang, Sanwen
dc.contributor.authorXu, Yong
dc.contributor.authorWeng, Yiqun
dc.contributor.authorMazourek, Michael
dc.contributor.authorReddy, Umesh K
dc.contributor.authorAndo, Kaori
dc.contributor.authorMcCreight, James D
dc.contributor.authorSchaffer, Arthur A
dc.contributor.authorBurger, Joseph
dc.contributor.authorTadmor, Yaakov
dc.contributor.authorKatzir, Nurit
dc.contributor.authorTang, Xuemei
dc.contributor.authorLiu, Yang
dc.contributor.authorGiovannoni, James J
dc.contributor.authorLing, Kai-Shu
dc.contributor.authorWechter, W Patrick
dc.contributor.authorLevi, Amnon
dc.contributor.authorGarcia-Mas, Jordi
dc.contributor.authorGrumet, Rebecca
dc.contributor.authorFei, Zhangjun
dc.contributor.otherProducció Vegetalca
dc.date.accessioned2019-01-16T16:46:45Z
dc.date.available2019-01-16T16:46:45Z
dc.date.issued2018-10-13
dc.identifier.citationZheng, Yi, Shan Wu, Yang Bai, Honghe Sun, Chen Jiao, Shaogui Guo, and Kun Zhao et al. 2018. "Cucurbit Genomics Database (Cugendb): A Central Portal For Comparative And Functional Genomics Of Cucurbit Crops". Nucleic Acids Research 47 (D1): D1128-D1136. Oxford University Press (OUP). doi:10.1093/nar/gky944.ca
dc.identifier.issn0305-1048ca
dc.identifier.urihttp://hdl.handle.net/20.500.12327/159
dc.description.abstractThe Cucurbitaceae family (cucurbit) includes several economically important crops, such as melon, cucumber, watermelon, pumpkin, squash and gourds. During the past several years, genomic and genetic data have been rapidly accumulated for cucurbits. To store, mine, analyze, integrate and disseminate these large-scale datasets and to provide a central portal for the cucurbit research and breeding community, we have developed the Cucurbit Genomics Database (CuGenDB; http://cucurbitgenomics.org) using the Tripal toolkit. The database currently contains all available genome and expressed sequence tag (EST) sequences, genetic maps, and transcriptome profiles for cucurbit species, as well as sequence annotations, biochemical pathways and comparative genomic analysis results such as synteny blocks and homologous gene pairs between different cucurbit species. A set of analysis and visualization tools and user-friendly query interfaces have been implemented in the database to facilitate the usage of these large-scale data by the community. In particular, two new tools have been developed in the database, a ‘SyntenyViewer’ to view genome synteny between different cucurbit species and an ‘RNA-Seq’ module to analyze and visualize gene expression profiles. Both tools have been packed as Tripal extension modules that can be adopted in other genomics databases developed using the Tripal system.ca
dc.format.extent9ca
dc.language.isoengca
dc.publisherOxford University Pressca
dc.relation.ispartofNucleic Acids Researchca
dc.rightsAttribution-NonCommercial 4.0 Internationalca
dc.rights.urihttp://creativecommons.org/licenses/by-nc/4.0/*
dc.titleCucurbit Genomics Database (CuGenDB): a central portal for comparative and functional genomics of cucurbit cropsca
dc.typeinfo:eu-repo/semantics/articleca
dc.description.versionreprintca
dc.embargo.termscapca
dc.subject.udc633 - Cultius i produccionsca
dc.identifier.doihttps://doi.org/10.1093/nar/gky944ca
dc.contributor.groupGenòmica i Biotecnologiaca


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