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Whole-genome sequencing reveals insights into the adaptation of French Charolais cattle to Cuban tropical conditions
(BMC, 2021-01-04)
Background: In the early 20th century, Cuban farmers imported Charolais cattle (CHFR) directly from France. These
animals are now known as Chacuba (CHCU) and have become adapted to the rough environmental ...
The Identification of Runs of Homozygosity Gives a Focus on the Genetic Diversity and Adaptation of the “Charolais de Cuba” Cattle
(MDPI, 2020-11-27)
Inbreeding and effective population size (Ne) are fundamental indicators for the management and conservation of genetic diversity in populations. Genomic inbreeding gives accurate estimates of inbreeding, ...
pSBVB: A versatile simulation tool to evaluate genomic selection in polyploid species
(Genetics Society of America, 2018-12-20)
Genomic Selection (GS) is the procedure whereby molecular information is used to predict complex phenotypes and it is standard in many animal and plant breeding schemes. However, only a small
number ...
Automatic Fruit Morphology Phenome and Genetic Analysis: An Application in the Octoploid Strawberry
(American Association for the Advancement of Science, 2021-05-12)
Automatizing phenotype measurement will decisively contribute to increase plant breeding efficiency. Among phenotypes, morphological traits are relevant in many fruit breeding programs, as appearance ...
kernInt: A Kernel Framework for Integrating Supervised and Unsupervised Analyses in Spatio-Temporal Metagenomic Datasets
(Frontiers Media, 2021-01-28)
The advent of next-generation sequencing technologies allowed relative quantification of microbiome communities and their spatial and temporal variation. In recent years, supervised learning (i.e., ...
Exploring deep learning for complex trait genomic prediction in polyploid outcrossing species
(Frontiers Media, 2020-02-06)
Genomic prediction (GP) is the procedure whereby the genetic merits of untested candidates are predicted using genome wide marker information. Although numerous examples of GP exist in plants and animals, ...