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dc.contributor.authorCrespo-Piazuelo, Daniel
dc.contributor.authorCriado-Mesas, Lourdes
dc.contributor.authorRevilla, Manuel
dc.contributor.authorCastelló, Anna
dc.contributor.authorFernández, Ana I.
dc.contributor.authorFolch, Josep M.
dc.contributor.authorBallester, Maria
dc.contributor.otherProducció Animalca
dc.date.accessioned2019-11-26T15:27:00Z
dc.date.available2019-11-26T15:27:00Z
dc.date.issued2019-06-27
dc.identifier.citationCrespo-Piazuelo, Daniel, Lourdes Criado-Mesas, Manuel Revilla, Anna Castelló, Ana I. Fernández, Josep M. Folch, and Maria Ballester. 2019. "Indel Detection From Whole Genome Sequencing Data And Association With Lipid Metabolism In Pigs". PLOS ONE 14 (6): e0218862. Public Library of Science (PLoS). doi:10.1371/journal.pone.0218862.ca
dc.identifier.issn1932-6203ca
dc.identifier.urihttp://hdl.handle.net/20.500.12327/564
dc.description.abstractThe selection in commercial swine breeds for meat-production efficiency has been increasing among the past decades, reducing the intramuscular fat content, which has changed the sensorial and technological properties of pork. Through processes of natural adaptation and selective breeding, the accumulation of mutations has driven the genetic divergence between pig breeds. The most common and well-studied mutations are single-nucleotide polymorphisms (SNPs). However, insertions and deletions (indels) usually represents a fifth part of the detected mutations and should also be considered for animal breeding. In the present study, three different programs (Dindel, SAMtools mpileup, and GATK) were used to detect indels from Whole Genome Sequencing data of Iberian boars and Landrace sows. A total of 1,928,746 indels were found in common with the three programs. The VEP tool predicted that 1,289 indels may have a high impact on protein sequence and function. Ten indels inside genes related with lipid metabolism were genotyped in pigs from three different backcrosses with Iberian origin, obtaining different allelic frequencies on each backcross. Genome-Wide Association Studies performed in the Longissimus dorsi muscle found an association between an indel located in the C1q and TNF related 12 (C1QTNF12) gene and the amount of eicosadienoic acid (C20:2(n-6)).ca
dc.format.extent17ca
dc.language.isoengca
dc.publisherPublic Library of Scienceca
dc.relation.ispartofPLoS ONEca
dc.rightsAttribution 4.0 Internationalca
dc.rights.urihttp://creativecommons.org/licenses/by/4.0/*
dc.titleIndel detection from Whole Genome Sequencing data and association with lipid metabolism in pigsca
dc.typeinfo:eu-repo/semantics/articleca
dc.description.versionreprintca
dc.embargo.termscapca
dc.subject.udc619ca
dc.identifier.doihttps://doi.org/10.1371/journal.pone.0218862ca
dc.contributor.groupGenètica i Millora Animalca


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