Now showing items 1146-1165 of 2510

    • Genome Assembly and Population Sequencing Reveal Three Populations and Signatures of Insecticide Resistance of Tuta absoluta in Latin America 

      Lewald, Kyle M.; Tabulok, Christina A.; Godfrey, Kristine E.; Arnó, Judit; Perini, Clérison R.; Guedes, Jerson C.; Chiu, Joanna C. (Genome Biology and Evolution, 2023-04-18) Protecció Vegetal Sostenible
      Tuta absoluta is one of the largest threats to tomato agriculture worldwide. Native to South America, it has rapidly spread throughout Europe, Africa, and Asia over the past two decades. To understand ...
    • Genome data from a sixteenth century pig illuminate modern breed relationships 

      Ramírez, O.; Burgos-Paz, W.; Casas, E.; Ballester Devis, Maria; Bianco, E.; Olalde, I.; Santpere, G.; Novella, V.; Gut, M.; Lalueza-Fox, C.; Saña, M.; Pérez-Enciso, M. (Heredity, 2014-09-10) Genètica i Millora Animal
      Ancient DNA (aDNA) provides direct evidence of historical events that have modeled the genome of modern individuals. In livestock, resolving the differences between the effects of initial domestication ...
    • Genome encode analyses reveal the basis of convergent evolution of fleshy fruit ripening 

      Lü, Peitao; Yu, Sheng; Zhu, Ning; Chen, Yun-Ru; Zhou, Biyan; Pan, Yu; Tzeng, David; Fabi, Joao Paulo; Argyris, Jason; Garcia-Mas, Jordi; Ye, Nenghui; Zhang, Jianhua; Grierson, Donald; Xiang, Jenny; Fei, Zhangjun; Giovannoni, James; Zhong, Silin (Nature Plants, 2018-09-24) Genòmica i Biotecnologia
      Fleshy fruits using ethylene to regulate ripening have developed multiple times in the history of angiosperms, presenting a clear case of convergent evolution whose molecular basis remains largely ...
    • Genome Sequence of the Brown Rot Fungal Pathogen Monilinia laxa 

      Naranjo-Ortíz, Miguel A.; Rodríguez-Píres, Silvia; Torres, Rosario; De Cal, Antonieta; Usall, Josep; Gabaldón, Toni (Genome Announcements, 2018-04-26) Postcollita
      Monilinia laxa (phylum Ascomycota) is a plant pathogen responsible for the brown rot blossom blight disease in stone fruit trees of the Rosaceae family, such as apricots. We report here the genome ...
    • Genome-enabled phylogenetic and functional reconstruction of an araphid pennate diatom Plagiostriata sp. CCMP470, previously assigned as a radial centric diatom, and its bacterial commensal 

      Sato, Shinya; Nanjappa, Deepak; Dorrell, Richard G.; Vieira, Fabio Rocha Jimenez; Kazamia, Elena; Tirichine, Leila; Veluchamy, Alaguraj; Heilig, Roland; Aury, Jean-Marc; Jaillon, Olivier; Wincker, Patrick; Fussy, Zoltan; Obornik, Miroslav; Muñoz-Gómez, Sergio A.; Mann, David G.; Bowler, Chris; Zingone, Adriana (Scientific Reports, 2020-06-10) Aigües Marines i Continentals
      Diatoms are an ecologically fundamental and highly diverse group of algae, dominating marine primary production in both open-water and coastal communities. The diatoms include both centric species, which ...
    • Genome-enabled predictions for fruit weight and quality from repeated records in European peach progenies 

      Biscarini, Filippo; Nazzicari, Nelson; Bink, Marco; Arús, Pere; Aranzana, Maria José; Verde, Ignazio; Micali, Sabrina; Pascal, Thierry; Quilot-Turion, Benedicte; Lambert, Patrick; da Silva Linge, Cassia; Pacheco, Igor; Bassi, Daniele; Stella, Alessandra; Rossini, Laura (BMC Genomics, 2017-06-06) Genòmica i Biotecnologia
      Background: Highly polygenic traits such as fruit weight, sugar content and acidity strongly influence the agroeconomic value of peach varieties. Genomic Selection (GS) can accelerate peach yield and ...
    • Genome-wide analysis of porcine backfat and intramuscular fat fatty acid composition using high-density genotyping and expression data 

      Muñoz, María; Rodríguez, M Carmen; Alves, Estefânia; Folch, Josep María; Ibañez-Escriche, Noelia; Silió, Luis; Fernández, Ana Isabel (BMC Genomics, 2013-12-02) Genètica i Millora Animal
      Background: Porcine fatty acid composition is a key factor for quality and nutritive value of pork. Several QTLs for fatty acid composition have been reported in diverse fat tissues. The results obtained ...
    • Genome-wide association analysis od senescence-related traits in maize 

      Yannam, Venkata Reddy; Caicedo, Marlon; Malvar, Rosa Ana; Ordás, Bernardo (International Journal of Molecular Sciences, 2022-12-14) Cultius Extensius Sostenibles
      Senescence is a programmed process that involves the destruction of the photosynthesis apparatus and the relocation of nutrients to the grain. Identifying senescence-associated genes is essential to ...
    • Genome-wide association study for feed efficiency in collective cage-raised rabbits under full and restricted feeding 

      Sánchez, J. P.; Legarra, A.; Velasco‐Galilea, M.; Piles, M.; Sánchez, A.; Rafel, O.; González‐Rodríguez, O.; Ballester, M. (Animal Genetics, 2020-07-22) Genètica i Millora Animal
      Feed efficiency (FE) is one of the most economically and environmentally relevant traits in the animal production sector. The objective of this study was to gain knowledge about the genetic control of ...
    • Genome-Wide Association Study Singles Out SCD and LEPR as the Two Main Loci Influencing Intramuscular Fat Content and Fatty Acid Composition in Duroc Pigs 

      Ros-Freixedes, Roger; Gol, Sofia; Pena, Ramona N.; Tor, Marc; Ibáñez-Escriche, Noelia; Dekkers, Jack C. M.; Estany, Joan (PLoS ONE, 2016-03-29) Genètica i Millora Animal
      Intramuscular fat (IMF) content and fatty acid composition affect the organoleptic quality and nutritional value of pork. A genome-wide association study was performed on 138 Duroc pigs genotyped with ...
    • Genome-Wide Differentiation of Various Melon Horticultural Groups for Use in GWAS for Fruit Firmness and Construction of a High Resolution Genetic Map 

      Nimmakayala, Padma; Tomason, Yan R.; Abburi, Venkata L.; Alvarado, Alejandra; Saminathan, Thangasamy; Vajja, Venkata G.; Salazar, Germania; Panicker, Girish K.; Levi, Amnon; Wechter, William P.; McCreight, James D.; Korol, Abraham B.; Ronin, Yefim; Garcia-Mas, Jordi; Reddy, Umesh K. (Frontiers in Plant Science, 2016-09-22) Genòmica i Biotecnologia
      Melon (Cucumis melo L.) is a phenotypically diverse eudicot diploid (2n = 2x = 24) has climacteric and non-climacteric morphotypes and show wide variation for fruit firmness, an important trait for ...
    • GENOMES UNCOUPLED1-independent retrograde signaling targets the ethylene pathway to repress photomorphogenesis 

      Gommers, Charlotte M. M.; Ruiz-Sola, María Águila; Ayats, Alba; Pereira, Lara; Pujol, Marta; Monte, Elena (Plant Physiology, 2020-11-19) Genòmica i Biotecnologia
      When germinating in the light, Arabidopsis (Arabidopsis thaliana) seedlings undergo photomorphogenic development, characterized by short hypocotyls, greening, and expanded cotyledons. Stressed chloroplasts ...
    • Genome‐wide detection of copy number variants in European autochthonous and commercial pig breeds by whole‐genome sequencing of DNA pools identified breed‐characterising copy number states 

      Bovo, S.; Ribani, A.; Muñoz, M.; Alves, E.; Araujo, J. P.; Bozzi, R.; Charneca, R.; Di Palma, F.; Etherington, G.; Fernandez, A. I.; García, F.; García‐Casco, J.; Karolyi, D.; Gallo, M.; Gvozdanović, K.; Martins, J. M.; Mercat, M. J.; Núñez, Y.; Quintanilla, R.; Radović, Č.; Razmaite, V.; Riquet, J.; Savić, R.; Schiavo, G.; Škrlep, M.; Usai, G.; Utzeri, V. J.; Zimmer, C.; Ovilo, C.; Fontanesi, L. (Animal Genetics, 2020-06-08) Genètica i Millora Animal
      In this study, we identified copy number variants (CNVs) in 19 European autochthonous pig breeds and in two commercial breeds (Italian Large White and Italian Duroc) that represent important genetic ...
    • Genomic analyses provide insights into peach local adaptation and responses to climate change 

      Li, Yong; Cao, Ke; Li, Nan; Zhu, Gengrui; Fang, Weichao; Chen, Changwen; Wang, Xinwei; Guo, Jian; Wang, Qi; Ding, Tiyu; Wang, Jiao; Guan, Liping; Wang, Junxiu; Liu, Kuozhan; Guo, Wenwu; Arús, Pere; Huang, Sanwen; Fei, Zhangjun; Wang, Lirong (Genome Research, 2021-03-09) Genòmica i Biotecnologia
      The environment has constantly shaped plant genomes, but the genetic bases underlying how plants adapt to environmental influences remain largely unknown. We constructed a high-density genomic variation ...
    • Genomic analysis of fruit size and shape traits in apple: unveiling candidate genes through GWAS analysis 

      Dujak, Christian; Coleto-Alcudia, Veredas; Aranzana, Maria Jose (Horticulture Research, 2023-12-19) Genòmica i Biotecnologia
      Genomic tools facilitate the efficient selection of improved genetic materials within a breeding program. Here, we focus on two apple fruit quality traits: shape and size. We utilized data from 11 fruit ...
    • Genomic analysis of sewage from 101 countries reveals global landscape of antimicrobial resistance 

      Munk, Patrick; Brinch, Christian; Møller, Frederik Duus; Petersen, Thomas N.; Hendriksen, Rene S.; Seyfarth, Anne Mette; Kjeldgaard, Jette S.; Svendsen, Christina Aaby; van Bunnik, Bram; Berglund, Fanny; Global Sewage Surveillance Consortium; Cerdà-Cuéllar, Marta; Larsson, D. G. Joakim; Koopmans, Marion; Woolhouse, Mark; Aarestrup, Frank M. (Nature Communications, 2022-12-01) Sanitat Animal
      Antimicrobial resistance (AMR) is a major threat to global health. Understanding the emergence, evolution, and transmission of individual antibiotic resistance genes (ARGs) is essential to develop ...
    • Genomic architecture of carcass and pork traits and their association with immune capacity 

      Jové-Juncà, T.; Crespo-Piazuelo, D.; González-Rodríguez, O.; Pascual, M.; Hernández-Banqué, C.; Reixach, J.; Quintanilla, R.; Ballester, M. (Animal, 2023-11-28) Genètica i Millora Animal
      Carcass and pork traits have traditionally been considered of prime importance in pig breeding programmes. However, the changing conditions in modern farming, coupled with antimicrobial resistance issues, ...
    • Genomic differentiation among varieties of Iberian pig 

      Alonso, Inés; Ibáñez-Escriche, Noelia; Noguera, José L.; Casellas, Joaquim; Martín de Hijas-Villalba, Melani; Gracia-Santana, María J.; Varona, Luis (Spanish Journal of Agricultural Research, 2020-02-26) Genètica i Millora Animal
      Aim of study: The objective of this study was to identify the autosomal genomic regions associated with genetic differentiation between three commercial strains of Iberian pig. Area of study: Extremadura ...
    • Genomic diversity, linkage disequilibrium and selection signatures in European local pig breeds assessed with a high density SNP chip 

      Muñoz, M.; Bozzi, R.; García-Casco, J.; Núñez, Y.; Ribani, A.; Franci, O.; García, F.; Škrlep, M.; Schiavo, G.; Bovo, S.; Utzeri, V. J.; Charneca, R.; Martins, J. M.; Quintanilla, R.; Tibau, J.; Margeta, V.; Djurkin-Kušec, I.; Mercat, M. J.; Riquet, J.; Estellé, J.; Zimmer, C.; Razmaite, V.; Araujo, J. P.; Radović, Č.; Savić, R.; Karolyi, D.; Gallo, M.; Čandek-Potokar, M.; Fernández, A.I.; Fontanesi, L.; Óvilo, C. (Scientific Reports, 2019-09-19) Genètica i Millora Animal
      Genetic characterization of local breeds is essential to preserve their genomic variability, to advance conservation policies and to contribute to their promotion and sustainability. Genomic diversity ...
    • Genomic Understanding of an Infectious Brain Disease from the Desert 

      Moreno, Leandro F.; Ahmed, Abdalla A. O.; Brankovics, Balázs; Cuomo, Christina A.; Menken, Steph B. J.; Taj-Aldeen, Saad J.; Faidah, Hani; Stielow, J. Benjamin; Teixeira, Marcus de M.; Prenafeta-Boldú, Francesc X.; Vicente, Vania A.; de Hoog, Sybren (G3: Genes, Genomes, Genetics, 2018-01-11) Sostenibilitat en Biosistemes
      Rhinocladiella mackenziei accounts for the majority of fungal brain infections in the Middle East, and is restricted to the arid climate zone between Saudi Arabia and Pakistan. Neurotropic dissemination ...