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Genetic diversity and selection signatures of the beef ‘Charolais de Cuba’ breed 

Rodriguez-Valera, Yoel; Renand, Gilles; Naves, Michel; Fonseca-Jiménez, Yidix; Moreno-Probance, Teresa Inés; Ramos-Onsins, Sebastian; Rocha, Dominique; Ramayo-Caldas, Yuliaxis (Scientific Reports, 2018-07-20)
In this study, we used BovineSNP50 Genotyping BeadChip data to estimate the structure, putative ancestral origin as well as to identify regions with selective sweeps that may have had an important role ...
 

Co-expression network analysis predicts a key role of microRNAs in the adaptation of the porcine skeletal muscle to nutrient supply 

Mármol-Sánchez, Emilio; Ramayo-Caldas, Yuliaxis; Quintanilla, Raquel; Cardoso, Tainã Figueiredo; González-Prendes, Rayner; Tibau, Joan; Amills, Marcel (Journal of Animal Science and Biotechnology, 2020-01-17)
Background The role of non-coding RNAs in the porcine muscle metabolism is poorly understood, with few studies investigating their expression patterns in response to nutrient supply. Therefore, we aimed ...
 

A functional regulatory variant of MYH3 influences muscle fiber-type composition and intramuscular fat content in pigs 

In-Cheol, Cho; Hee-Bok, Park; Jin Seop, Ahn; Sang-Hyun, Han; Jae-Bong, Lee; Hyun-Tae, Lim; Chae-Kyoung, Yoo; Eun-Ji, Jung; Dong-Hwan, Kim; Wu-Sheng, Sun; Ramayo-Caldas, Yuliaxis; Sang-Geum, Kim; Yong-Jun, Kang; Yoo-Kyung, Kim; Hyun-Sook, Shin; Pil-Nam, Seong; In-Sul, Hwang; Beom-Young, Park; Seongsoo, Hwang; Sung-Soo, Lee; Youn-Chul, Ryu; Jun-Heon, Lee; Moon-Suck, Ko; Kichoon, Lee; Andersson, Göran; Pérez-Enciso, Miguel; Jeong-Jeong, Lee (PLoS Genetics, 2019-10-11)
Muscle development and lipid accumulation in muscle critically affect meat quality of livestock. However, the genetic factors underlying myofiber-type specification and intramuscular fat (IMF) accumulation ...
 

Characterization of bacterial microbiota compositions along the intestinal tract in pigs and their interactions and functions 

Crespo-Piazuelo, Daniel; Estellé, Jordi; Revilla, Manuel; Criado-Mesas, Lourdes; Ramayo-Caldas, Yuliaxis; Óvilo, Cristina; Fernández, Ana I.; Ballester, Maria; Folch, Josep M. (Scientific Reports, 2018-08-28)
In addition to its value in meat production, the pig is an interesting animal model for human digestive tract studies due to its physiological similarities. The aim of this study was to describe the ...
 

Modulatory effect of protein and carotene dietary levels on pig gut microbiota 

González-Prendes, Rayner; Pena, Ramona Natacha; Solé, Emma; Seradj, Ahmad Reza; Estany, Joan; Ramayo-Caldas, Yuliaxis (Scientific Reports, 2019-10-10)
In this study we investigated the impact of dietary protein and carotene levels on microbial functions and composition during the last month of purebred fattening Duroc pigs. Fecal microbiota was ...
 

Integration of GWAS, pathway and network analyses reveals novel mechanistic insights into the synthesis of milk proteins in dairy cows 

Pegolo, Sara; Mach, Núria; Ramayo-Caldas, Yuliaxis; Schiavon, Stefano; Bittante, Giovanni; Cecchinato, Alessio (Scientific Reports, 2018-01-12)
The quantities and proportions of protein fractions have notable effects on the nutritional and technological value of milk. Although much is known about the effects of genetic variants on milk proteins, ...
 

Integrating genome-wide co-association and gene expression to identify putative regulators and predictors of feed efficiency in pigs 

Ramayo-Caldas, Yuliaxis; Mármol-Sánchez, Emilio; Ballester, Maria; Pablo Sánchez, Juan; González-Prendes, Rayner; Amills, Marcel; Quintanilla, Raquel (Genetics Selection Evolution, 2019-09-02)
Background: Feed efciency (FE) has a major impact on the economic sustainability of pig production. We used a systems‑based approach that integrates single nucleotide polymorphism (SNP) co‑association ...
 

Sequence-based GWAS, network and pathway analyses reveal genes co-associated with milk cheese-making properties and milk composition in Montbéliarde cows 

Sanchez, Marie-Pierre; Ramayo-Caldas, Yuliaxis; Wolf, Valérie; Laithier, Cécile; El Jabri, Mohammed; Michenet, Alexis; Boussaha, Mekki; Taussat, Sébastien; Fritz, Sébastien; Delacroix-Buchet, Agnès; Brochard, Mickaël; Boichard, Didier (Genetics Selection Evolution, 2019-07-01)
Background Milk quality in dairy cattle is routinely assessed via analysis of mid-infrared (MIR) spectra; this approach can also be used to predict the milk’s cheese-making properties (CMP) and ...
 

About the existence of common determinants of gene expression in the porcine liver and skeletal muscle 

González-Prendes, Rayner; Mármol-Sánchez, Emilio; Quintanilla, Raquel; Castelló, Anna; Zidi, Ali; Ramayo-Caldas, Yuliaxis; Figueiredo Cardoso, Tainã; Manunza, Arianna; Cánovas, Ángela; Amills, Marcel (BMC Genomics, 2019-06-24)
Background: The comparison of expression QTL (eQTL) maps obtained in different tissues is an essential step to understand how gene expression is genetically regulated in a context-dependent manner. In ...
 

Link-HD: a versatile framework to explore and integrate heterogeneous microbial communities 

Zingaretti, Laura M.; Renand, Gilles; Morgavi, Diego P.; Ramayo-Caldas, Yuliaxis (Bioinformatics, 2019-11-18)
Motivation We present Link-HD, an approach to integrate multiple datasets. Link-HD is a generalization of ‘Structuration des Tableaux A Trois Indices de la Statistique–Analyse Conjointe de Tableaux’, a ...
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Ramayo-Caldas, Yuliaxis (22)
Quintanilla, Raquel (6)Ballester, Maria (5)González-Prendes, Rayner (5)Amills, Marcel (3)González-Rodríguez, Olga (3)Mármol-Sánchez, Emilio (3)Renand, Gilles (3)Rocha, Dominique (3)Sánchez, Armand (3)... Show moreSubject619 (12)636 (7)59 (2)636 - Explotació i cria d'animals. Cria del bestiar i d'animals domèstics (2)57 (1)575 (1)579 (1)639 (1)663/664 (1)... Show moreAreaProducció Animal (22)Agrosistemes i Medi Ambient (2)ProgramGenètica i Millora Animal (21)Gestió Integral de Residus Orgànics (2)Sanitat Animal (2)Aqüicultura (1)Nutrició Animal (1)Issue Date2021 (2)2020 (10)2019 (6)2018 (4)Grant agreement numberEC/H2020/665919/EU/Opening Sphere UAB-CEI to PostDoctoral Fellows/P-SPHERE (12)MINECO/Programa Estatal de fomento de la investigación científica y técnica de excelencia/SEV-2015-0533/ES/ / (5)MINECO/ /SEV-2015-0533/ES/ / (3)MINECO/Programa Estatal de I+D+I orientada a los retos de la sociedad/AGL2013-48742-C2-1-R/ES/FISIOLOGIA GENOMICA DEL DEPOSITO DE GRASA INTRAMUSCULAR EN PORCINO/ (3)MINECO/Programa Estatal de I+D+I orientada a los retos de la sociedad/AGL2013-48742-C2-2-R/ES/FISIOLOGIA GENOMICA DEL DEPOSITO DE GRASA INTRAMUSCULAR EN PORCINO/ (3)MINECO/Programa Estatal de I+D+I orientada a los retos de la sociedad/AGL2016-78709-R/ES/UTILIZACION DE SECUENCIAS COMPLETAS PARA LA MEJORA DE ESPECIES DOMESTICAS/ (3)MINECO/Programa Estatal de promoción del talento y su empleabilidad en I+D+I/RYC‑2013‑12573/ES/ / (3)MINECO/Programa Estatal de I+D+I orientada a los retos de la sociedad/AGL2016-75432-R/ES/DETERMINACION GENETICA DE LA CAPACIDAD INMUNOLOGICA EN PORCINO: IDENTIFICACION DE VARIANTES GENETICAS FUNCIONALES PARA LA IMPLEMENTACION DE SELECCION GENOMICA/ (2)EC/FP7/267196/EU/International Mobility Programme to Strengthen Skills and Excellence in Research for Agriculture/AGREENSKILLS (1)EC/FP7/311794/EU/A whole-systems approach to optimising feed efficiency and reducing the ecological footprint of monogastrics/ECO-FCE (1)... Show moreAvailabilityOpen access (20)Embargoed access (2)Document versionPublished version (21)Accepted version (1)


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