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Inheritance and QTL analysis of chilling and heat requirements for flowering in an interspecific almond x peach (Texas x Earlygold) F2 population 

Cantin, Celia M.; Wang, Xin-Wei; Almira, María; Arús, Pere; Eduardo, Iban (Springer Verlag, 2020-03-04)
Blooming in temperate fruit species is triggered by chilling and heat requirements (CR and HR), with a wide range of requirements within the same species. CR for flower bud dormancy release has become ...
 

Fine mapping of the peach pollen sterility gene (Ps/ps) and detection of markers for marker-assisted selection 

Eduardo, I.; de Tomás, C.; Alexiou, K. G.; Giovannini, D.; Pietrella, M.; Carpenedo, S.; Bassols Raseira, M. C.; Batlle, I.; Cantín, M. C.; Aranzana, M. J.; Arús, P. (Molecular Breeding, 2020-06-10)
In peach, pollen sterility, expressed as absence of pollen in the anthers, segregates as an undesired trait in breeding programs. Pollen fertility screening in progenies is not a common practice mainly ...
 

Polymorphisms of the cryptochrome 2 and mitoguardin 2 genes are associated with the variation of lipid-related traits in Duroc pigs 

Mármol-Sánchez, Emilio; Quintanilla, Raquel; Cardoso, Taina F.; Jordana Vidal, Jordi; Amills, Marcel (Scientific Reports, 2019-06-21)
The genetic factors determining the phenotypic variation of porcine fatness phenotypes are still largely unknown. We investigated whether the polymorphism of eight genes (MIGA2, CRY2, NPAS2, CIART, ARNTL2, ...
 

pSBVB: A versatile simulation tool to evaluate genomic selection in polyploid species 

Zingaretti, María L.; Monfort, Amparo; Pérez-Enciso, Miguel (G3, 2018-12-20)
Genomic Selection (GS) is the procedure whereby molecular information is used to predict complex phenotypes and it is standard in many animal and plant breeding schemes. However, only a small number ...
 

High-density multi-population consensus genetic linkage map for peach 

da Silva Linge, Cassia; Antanaviciute, Laima; Abdelghafar, Asma; Arús, Pere; Bassi, Daniele; Rossini, Laura; Ficklin, Stephen; Gasic, Ksenija (PLOS ONE, 2018-11-21)
Highly saturated genetic linkage maps are extremely helpful to breeders and are an essential prerequisite for many biological applications such as the identification of marker-trait associations, mapping ...
 

Exploring deep learning for complex trait genomic prediction in polyploid outcrossing species 

Zingaretti, Laura M.; Gezan, Salvador Alejandro; Ferrão, Luis Felipe V.; Osorio, Luis F.; Monfort, Amparo; Muñoz, Patricio R.; Whitaker, Vance M.; Pérez-Enciso, Miguel (Frontiers in Plant Science, 2020-02-06)
Genomic prediction (GP) is the procedure whereby the genetic merits of untested candidates are predicted using genome wide marker information. Although numerous examples of GP exist in plants and animals, ...
 

Genotyping by Sequencing in Almond: SNP Discovery, Linkage Mapping, and Marker Design 

Goonetilleke, Shashi N.; March, Timothy J.; Wirthensohn, Michelle; Arús, Pere; Walker, Amanda R.; Mather, Diane E. (G3, 2017-11-15)
In crop plant genetics, linkage maps provide the basis for the mapping of loci that affect important traits and for the selection of markers to be applied in crop improvement. In outcrossing species ...
 

An improved assembly and annotation of the melon (Cucumis melo L.) reference genome 

Ruggieri, Valentino; Alexiou, Konstantinos G.; Morata, Jordi; Argyris, Jason; Pujol, Marta; Yano, Ryoichi; Nonaka, Satoko; Ezura, Hiroshi; Latrasse, David; Boualem, Adnane; Benhamed, Moussa; Bendahmane, Abdelhhafid; Aiese Cigliano, Riccardo; Sanseverino, Walter; Puigdomènech, Pere; Casacuberta, Josep M.; Garcia-Mas, Jordi (Scientific Reports, 2018-05-24)
We report an improved assembly (v3.6.1) of the melon (Cucumis melo L.) genome and a new genome annotation (v4.0). The optical mapping approach allowed correcting the order and the orientation of 21 ...
 

Co-expression network analysis predicts a key role of microRNAs in the adaptation of the porcine skeletal muscle to nutrient supply 

Mármol-Sánchez, Emilio; Ramayo-Caldas, Yuliaxis; Quintanilla, Raquel; Cardoso, Tainã Figueiredo; González-Prendes, Rayner; Tibau, Joan; Amills, Marcel (Journal of Animal Science and Biotechnology, 2020-01-17)
Background The role of non-coding RNAs in the porcine muscle metabolism is poorly understood, with few studies investigating their expression patterns in response to nutrient supply. Therefore, we aimed ...
 

An improved melon reference genome with single-molecule sequencing uncovers a recent burst of transposable elements with potential impact on genes 

Castanera, Raúl; Ruggieri, Valentino; Pujol, Marta; Garcia-Mas, Jordi; Casacuberta, Josep M. (Frontiers in Plant Science, 2020-01-31)
The published melon (Cucumis melo L.) reference genome assembly (v3.6.1) has still 41.6 Mb (Megabases) of sequences unassigned to pseudo-chromosomes and about 57 Mb of gaps. Although different approaches ...
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AuthorArús, Pere (7)Amills, Marcel (4)Quintanilla, Raquel (4)Casacuberta, Josep M. (3)Eduardo, Iban (3)Garcia-Mas, Jordi (3)González-Prendes, Rayner (3)Mármol-Sánchez, Emilio (3)Ramayo-Caldas, Yuliaxis (3)Alexiou, K. G. (2)... Show moreSubject633 (7)633 - Cultius i produccions (5)619 (4)574 (1)575 - Genètica general. Citogenètica general. Immunogenètica. Evolució. Filogènia (1)59 (1)636 (1)663/664 (1)... Show moreAreaProducció Vegetal (14)Producció Animal (5)Agrosistemes i Medi Ambient (1)Indústries Alimentàries (1)ProgramGenòmica i Biotecnologia (13)Genètica i Millora Animal (5)Fructicultura (2)Aigües Marines i Continentals (1)Cultius Extensius Sostenibles (1)Qualitat del Producte (1)Issue Date2020 (6)2019 (6)2018 (6)2017 (1)Grant agreement number
MINECO/ /SEV-2015-0533/ES/ / (19)
EC/H2020/665919/EU/Opening Sphere UAB-CEI to PostDoctoral Fellows/P-SPHERE (4)MINECO/Programa Estatal de I+D+I orientada a los retos de la sociedad/AGL2013-48742-C2-1-R/ES/FISIOLOGIA GENOMICA DEL DEPOSITO DE GRASA INTRAMUSCULAR EN PORCINO/ (3)MINECO/Programa Estatal de I+D+I orientada a los retos de la sociedad/AGL2013-48742-C2-2-R/ES/FISIOLOGIA GENOMICA DEL DEPOSITO DE GRASA INTRAMUSCULAR EN PORCINO/ (3)MINECO/Programa Estatal de I+D+I orientada a los retos de la sociedad/AGL2015-64625-C2-1-R/ES/DISECCION GENETICA DE DOS CARACTERES DE INTERES AGRONOMICO EN MELON: RESISTENCIA A CUCUMBER MOSAIC VIRUS Y MADURACION CLIMATERICA DE FRUTO/RESMELORIP (3)INIA/Programa Estatal de I+D+I orientada a los retos de la sociedad/RTA2015-00050-00-00/ES/Nuevas estrategias de mejora del melocotonero basadas en marcadores moleculares: introgresión asistida por marcadores y resíntesis/ (2)MINECO-FEDER/Programa Estatal de I+D+I orientada a los retos de la sociedad/AGL2015-68329-R/ES/DENTIFICACION Y CARACTERIZACION DE GENES IMPLICADOS EN LA FORMA Y JUGOSIDAD DEL FRUTO EN MELOCOTONERO Y ALMENDRO/ALMELO (2)MINECO-FEDER/Programa Estatal de I+D+I orientada a los retos de la sociedad/AGL2015-68329-R/ES/Identificación y caracterización de genes implicados en la forma y jugosidad del fruto en melocotonero y almendro/ALMELO (2)MINECO-FEDER/Programa Estatal de I+D+I orientada a los retos de la Sociedad/AGL2016-78992-R/ES/INPACTO DE LOS TRANSPOSONES EN LA EVOLUCION DE LOS GENOMAS DE PLANTAS CULTIVADAS/ (2)MINECO-FEDER/Programa Estatal de I+D+I orientada a los retos de la sociedad/RTA2015-00050-00-00/ES/Nuevas estrategias de mejora del melocotonero basadas en marcadores moleculares: introgresión asistida por marcadores y resíntesis/ (2)... Show moreAvailabilityOpen access (15)Embargoed access (4)Document versionPublished version (16)Accepted version (3)


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