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Transposons played a major role in the diversification between the closely related almond and peach genomes: Results from the almond genome sequence
(Wiley, 2019-09-16)
We sequenced the genome of the highly heterozygous almond Prunus dulcis cv. Texas combining short and long‐read sequencing. We obtained a genome assembly totaling 227.6 Mb of the estimated 238 Mb almond ...
Two Loci, RiAF3 and RiAF4, Contribute to the Annual-Fruiting Trait in Rubus
(Frontiers Media, 2019-10-25)
Most Rubus species have a biennial cycle of flowering and fruiting with an intervening period of winter dormancy, in common with many perennial fruit crops. Annual-fruiting (AF) varieties of raspberry ...
Genome and transcriptome analysis of the Mesoamerican common bean and the role of gene duplications in establishing tissue and temporal specialization of genes
(BMC, 2016-02-25)
Background: Legumes are the third largest family of angiosperms and the second most important crop class. Legume genomes have been shaped by extensive large-scale gene duplications, including an ...
Mapping Cucumber Vein Yellowing Virus Resistance in Cucumber (Cucumis sativus L.) by Using BSA-seq Analysis
(Frontiers Media, 2019-12-03)
Cucumber vein yellowing virus (CVYV) causes severe yield losses in cucurbit crops across Mediterranean countries. The control of this virus is based on cultural practices to prevent the presence of its ...
Whole genome comparisons of Fragaria, Prunus and Malus reveal different modes of evolution between Rosaceous subfamilies
(BMC, 2012-04-04)
Background: Rosaceae include numerous economically important and morphologically diverse species.
Comparative mapping between the member species in Rosaceae have indicated some level of synteny. ...
Development and Evaluation of a 9K SNP Array for Peach by Internationally Coordinated SNP Detection and Validation in Breeding Germplasm
(Public Library of Science, 2012-04-20)
Although a large number of single nucleotide polymorphism (SNP) markers covering the entire genome are needed to
enable molecular breeding efforts such as genome wide association studies, fine mapping, ...
A first insight into peach [Prunus persica (L.) Batsch] SNP variability
(Springer, 2012-06-10)
Three factors may have reduced the diversity at
both individual gene and whole genome levels in cultivated
peach: its self-compatible mating system, the narrow genetic
basis of most commercial ...
An integrated approach for increasing breeding efficiency in apple and peach in Europe
(Springer Nature, 2018-03-01)
Despite the availability of whole genome sequences of apple and peach, there has been a considerable gap between genomics and breeding. To bridge the gap, the European Union funded the FruitBreedomics ...
The Evolutionary Consequences of Transposon-Related Pericentromer Expansion in Melon
(Oxford University Press, 2018-06-23)
Abstract
Transposable elements (TEs) are a major driver of plant genome evolution. A part from being a rich source of new genes and regulatory sequences, TEs can also affect plant genome evolution ...
Cucurbit Genomics Database (CuGenDB): a central portal for comparative and functional genomics of cucurbit crops
(Oxford University Press, 2018-10-13)
The Cucurbitaceae family (cucurbit) includes several economically important crops, such as melon, cucumber, watermelon, pumpkin, squash and gourds. During the past several years, genomic and genetic ...