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An efficient CRISPR-Cas9 enrichment sequencing strategy for characterizing complex and highly duplicated genomic regions. A case study in the Prunus salicina LG3-MYB10 genes cluster
(BMC, 2022-08-27)
Background: Genome complexity is largely linked to diversifcation and crop innovation. Examples of regions with duplicated genes with relevant roles in agricultural traits are found in many crops. In ...
Woodland strawberry axillary bud fate is dictated by a crosstalk of environmental and endogenous factors
(American Society of Plant Biologists, 2021-09-01)
Plant architecture is defined by fates and positions of meristematic tissues and has direct consequences on yield potential and environmental adaptation of the plant. In strawberries (Fragaria vesca L. ...
Almond population genomics and non-additive GWAS reveal new insights into almond dissemination history and candidate genes for nut traits and blooming time
(Oxford University Press, 2023-09-25)
Domestication drastically changed crop genomes, fixing alleles of interest and creating different genetic populations. Genome-wide
association studies (GWASs) are a powerful tool to detect these alleles ...
Inheritance of esters and other volatile compounds responsible for the fruity aroma in strawberry
(Frontiers Media, 2022-08-12)
Cultivated strawberry, Fragaria × ananassa, has a complex aroma due to the presence of more than 350 volatile organic compounds (VOCs). However, a mixture of only 19 compounds, called Key Volatile ...
Whole genome scanning of a Mediterranean basin hotspot collection provide new insights into olive tree biodiversity and biology
(Wiley, 2023-05-10)
Olive tree (Olea europaea L. subsp. europaea var. europaea) is one of the most important species of the Mediterranean region and one of the most ancient species domesticated. The availability of whole ...
Shape, firmness and fruit quality QTLs shared in two non-related strawberry populations
(Elsevier, 2021-07-29)
The cultivated strawberry (Fragaria x ananassa) is an octoploid species (2n = 8x = 56), appreciated widely for its fruit. There have been very few studies on fruit quality traits, which are known to be ...
Genomic analysis of fruit size and shape traits in apple: unveiling candidate genes through GWAS analysis
(Oxford University Press, 2023-12-19)
Genomic tools facilitate the efficient selection of improved genetic materials within a breeding program. Here, we focus on two apple fruit quality traits: shape and size. We utilized data from 11 fruit ...
Exploring large-scale gene coexpression networks in peach (Prunus persica L.): a new tool for predicting gene function
(Oxford University Press, 2024-01-02)
Peach is a model for Prunus genetics and genomics, however, identifying and validating genes associated to peach breeding traits is a
complex task. A gene coexpression network (GCN) capable of capturing ...
PERSEUS: an interactive and intuitive web-based tool for pedigree visualization
(Oxford University Press, 2024-02-03)
Pedigree-based analyses’ prime role is to unravel relationships between individuals in breeding programs and germplasms. This is critical information for decoding the genetics underlying main inherited ...
Genetic regulation of volatile production in two melon introgression line collections with contrasting ripening behavior
(Oxford University Press, 2024-01-16)
The importance of melon aroma in determining fruit quality has been highlighted in recent years. The fruit volatile profile is influenced by the type of fruit ripening. Non-climacteric fruits contain ...