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Opportunities and limits of combining microbiome and genome data for complex trait prediction
(BMC, 2021-08-06)
Background
Analysis and prediction of complex traits using microbiome data combined with host genomic information is a topic of utmost interest. However, numerous questions remain to be answered: how ...
Identification of rumen microbial biomarkers linked to methane emission in Holstein dairy cows
(Wiley, 2019-08-16)
Mitigation of greenhouse gas emissions is relevant for reducing the environmental impact of ruminant production. In this study, the rumen microbiome from Holstein cows was characterized through a ...
Recent Advances in Enteric Methane Mitigation and the Long Road to Sustainable Ruminant Production
(Annual Reviews, 2024-02)
Mitigation of methane emission, a potent greenhouse gas, is a worldwide priority to limit global warming. A substantial part of anthropogenic methane is emitted by the livestock sector, as methane is a ...
Analysis of porcine adipose tissue transcriptome reveals differences in de novo fatty acid synthesis in pigs with divergent muscle fatty acid composition
(BMC, 2013-12-01)
Background: In pigs, adipose tissue is one of the principal organs involved in the regulation of lipid metabolism.
It is particularly involved in the overall fatty acid synthesis with consequences in ...
Segregation of Regulatory Polymorphisms with Effects on the Gluteus Medius Transcriptome in a Purebred Pig Population
(Public Library of Science, 2012-04-24)
Background: The main goal of the present study was to analyse the genetic architecture of mRNA expression in muscle, a
tissue with an outmost economic importance for pig breeders. Previous studies have ...
Variability-specific differential gene expression across reproductive stages in sows
(Elsevier, 2013-10-11)
Differential gene expression analyses typically focus on departures across mathematical expectations (i.e. mean) from two or more groups of microarrays, without considering alternative patterns of ...
Selection of Internal Control Genes for Real-Time Quantitative PCR in Ovary and Uterus of Sows across Pregnancy
(Public Library of Science, 2013-06-13)
Background: Reproductive traits play a key role in pig production in order to reduce costs and increase economic returns. Among others, gene expression analyses represent a useful approach to study ...
A compendium of genetic regulatory effects across pig tissues
(Nature Research, 2024-01-04)
The Farm Animal Genotype-Tissue Expression (FarmGTEx) project has been established to develop a public resource of genetic regulatory variants in livestock, which is essential for linking genetic ...
Disentangling the causal relationship between rabbit growth and cecal microbiota through structural equation models
(BMC, 2022-12-19)
Background
The effect of the cecal microbiome on growth of rabbits that were fed under different regimes has been studied previously. However, the term “effect” carries a causal meaning that can be ...
Genotype by feeding regimen interactions for slaughter traits in rabbit and expected responses under restricted and full feeding
(Wiley, 2022-05-12)
The interaction between the genotype and feeding regimen (G×FR) for slaughter traits was estimated from data corresponding to 2557 animals under full (FF) and 2424 with restricted feeding (RF). Expected ...