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Evaluation of two short overlapping rbcL markers for diatom metabarcoding of environmental samples: Effects on biomonitoring assessment and species resolution
(Elsevier, 2022-08-08)
Two short diatom rbcL barcodes, 331-bp and 263-bp in length, have frequently been used in diatom metabarcoding studies. They overlap in a common 263-bp region but differ in the presence or absence of a ...
Evaluation and sensitivity analysis of diatom DNA metabarcoding for WFD bioassessment of Mediterranean rivers
(Elsevier, 2020-04-04)
Our study of 164 diatom samples from Catalonia (NE Spain) is the first to evaluate the applicability of DNA metabarcoding, based on high throughput sequencing (HTS) using a 312-bp rbcL marker, for ...
Annotated 18S and 28S rDNA reference sequences of taxa in the planktonic diatom family Chaetocerotaceae
(PLOS, 2018-12-26)
The species-rich diatom family Chaetocerotaceae is common in the coastal marine phytoplankton worldwide where it is responsible for a substantial part of the primary production. Despite its relevance ...
A Description of Biremis panamae sp. nov., a New Diatom Species from the Marine Littoral, with an Account of the Phylogenetic Position of Biremis D.G. Mann et E.J. Cox (Bacillariophyceae)
(Public Library of Science, 2014-12-10)
Here we present a formal description of Biremis panamae Barka, Witkowski et Weisenborn sp. nov., which was isolated from the marine littoral environment of the Pacific Ocean coast of Panama. The description ...
Tribute to Eileen J. Cox - Editorial
(National Botanic Garden of Belgium and Royal Botanical Society of Belgium, 2019-07-09)
This issue is dedicated to Dr. Eileen Joan Cox on the occasion of her 70th birthday. Eileen is a very well-known phycologist who has made a major contribution to diatom research, for instance in terms ...
Assessment of a novel microalgae-cork based technology for removing antibiotics, pesticides and nitrates from groundwater
(Elsevier, 2022-04-29)
Groundwater pollution has increased in recent years due to the intensification of agricultural and livestock activities. This results in a significant reduction in available freshwater resources. Here, ...
The potential of High-Throughput Sequencing (HTS) of natural samples as a source of primary taxonomic information for reference libraries of diatom barcodes
(Czech Phycological Society, 2018-02-27)
Diatoms are used routinely to assess pollution level in rivers and lakes. Current methods are based on identification by light microscopy, which is laborious. An alternative is to identify species based ...
The taxonomy and diversity of Proschkinia (Bacillariophyta), a common but enigmatic genus from marine coasts
(Wiley, 2020-04-07)
Detailed morphological documentation is provided for established Proschkinia taxa, including the generitype, P. bulnheimii, and P. complanata, P. complanatula, P. complanatoides and P. hyalosirella, and ...
Connecting the morphological and molecular species concepts to facilitate species identification within the genus Fragilaria (Bacillariophyta)
(Wiley, 2019-05-20)
This paper explores the diversity and taxonomy of species within Fragilaria sensu stricto, an abundant and ecologically important diatom genus, taking advantage of cultured and DNA ‐barcoded material. ...
Description of Navicula vanseea sp. nov. (Naviculales, Naviculaceae), a new species of diatom from the highly alkaline Lake Van (Republic of Türkiye) with complete characterisation of its organellar genomes and multigene phylogeny
(Pensoft Publishers, 2024-04-08)
The current article describes Navicula vanseea sp. nov., a new species of diatom from Lake Van, a highly alkaline lake in Eastern Anatolia (Türkiye). The description is based on light and scanning ...