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Setting a baseline for global urban virome surveillance in sewage
dc.contributor.author | Nieuwenhuijse, David F. | |
dc.contributor.author | Oude Munnink, Bas B. | |
dc.contributor.author | Phan, Mi V. T. | |
dc.contributor.author | the Global Sewage Surveillance project consortium | |
dc.contributor.author | Cerdà-Cuéllar, Marta | |
dc.contributor.author | Munk, Patrick | |
dc.contributor.author | Venkatakrishnan, Shweta | |
dc.contributor.author | Aarestrup, Frank M. | |
dc.contributor.author | Cotten, Matthew | |
dc.contributor.author | Koopmans, Marion P. G. | |
dc.contributor.other | Producció Animal | ca |
dc.date.accessioned | 2020-12-10T16:43:59Z | |
dc.date.available | 2020-12-10T16:43:59Z | |
dc.date.issued | 2020-08-13 | |
dc.identifier.citation | Nieuwenhuijse, David F., Bas B. Oude Munnink, My V. T. Phan, Patrick Munk, Shweta Venkatakrishnan, Frank M. Aarestrup, Matthew Cotten, and Marion P. G. Koopmans. 2020. "Setting A Baseline For Global Urban Virome Surveillance In Sewage". Scientific Reports 10 (1). doi:10.1038/s41598-020-69869-0. | ca |
dc.identifier.issn | 2045-2322 | ca |
dc.identifier.uri | http://hdl.handle.net/20.500.12327/1013 | |
dc.description.abstract | The rapid development of megacities, and their growing connectedness across the world is becoming a distinct driver for emerging disease outbreaks. Early detection of unusual disease emergence and spread should therefore include such cities as part of risk-based surveillance. A catch-all metagenomic sequencing approach of urban sewage could potentially provide an unbiased insight into the dynamics of viral pathogens circulating in a community irrespective of access to care, a potential which already has been proven for the surveillance of poliovirus. Here, we present a detailed characterization of sewage viromes from a snapshot of 81 high density urban areas across the globe, including in-depth assessment of potential biases, as a proof of concept for catch-all viral pathogen surveillance. We show the ability to detect a wide range of viruses and geographical and seasonal differences for specific viral groups. Our findings offer a cross-sectional baseline for further research in viral surveillance from urban sewage samples and place previous studies in a global perspective. | ca |
dc.format.extent | 13 | ca |
dc.language.iso | eng | ca |
dc.publisher | Nature Research | ca |
dc.relation.ispartof | Scientific Reports | ca |
dc.rights | Attribution 4.0 International | ca |
dc.rights.uri | http://creativecommons.org/licenses/by/4.0/ | * |
dc.title | Setting a baseline for global urban virome surveillance in sewage | ca |
dc.type | info:eu-repo/semantics/article | ca |
dc.description.version | info:eu-repo/semantics/publishedVersion | ca |
dc.rights.accessLevel | info:eu-repo/semantics/openAccess | |
dc.embargo.terms | cap | ca |
dc.relation.projectID | EC/H2020/643476/EU/Collaborative Management Platform for detection and Analyses of (Re-)emerging and foodborne outbreaks in Europe/COMPARE | ca |
dc.subject.udc | 619 | ca |
dc.identifier.doi | https://doi.org/10.1038/s41598-020-69869-0 | ca |
dc.contributor.group | Sanitat Animal | ca |
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