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The genome of woodland strawberry (Fragaria vesca)

dc.contributor.authorShulaev, Vladimir
dc.contributor.authorSargent, Daniel J.
dc.contributor.authorCrowhurst, Ross N.
dc.contributor.authorMockler, Todd C.
dc.contributor.authorFolkerts, Otto
dc.contributor.authorDelcher, Arthur L.
dc.contributor.authorJaiswal, Pankaj
dc.contributor.authorMockaitis, Keithanne
dc.contributor.authorListon, Aaron
dc.contributor.authorMane, Shrinivasrao P.
dc.contributor.authorBurns, Paul
dc.contributor.authorDavis, Thomas M.
dc.contributor.authorSlovin, Janet P.
dc.contributor.authorBassil, Nahla
dc.contributor.authorHellens, Roger P.
dc.contributor.authorEvans, Clive
dc.contributor.authorHarkins, Tim
dc.contributor.authorKodira, Chinnappa
dc.contributor.authorDesany, Brian
dc.contributor.authorCrasta, Oswald R.
dc.contributor.authorJensen, Roderick V.
dc.contributor.authorAllan, Andrew C.
dc.contributor.authorMichael, Todd P.
dc.contributor.authorSetubal, Joao Carlos
dc.contributor.authorCelton, Jean-Marc
dc.contributor.authorRees, D. Jasper G.
dc.contributor.authorWilliams, Kelly P.
dc.contributor.authorHolt, Sarah H.
dc.contributor.authorRuiz Rojas, Juan Jairo
dc.contributor.authorChatterjee, Mithu
dc.contributor.authorLiu, Bo
dc.contributor.authorSilva, Herman
dc.contributor.authorMeisel, Lee
dc.contributor.authorAdato, Avital
dc.contributor.authorFilichkin, Sergei A.
dc.contributor.authorTroggio, Michela
dc.contributor.authorViola, Roberto
dc.contributor.authorAshman, Tia-Lynn
dc.contributor.authorWang, Hao
dc.contributor.authorDharmawardhana, Palitha
dc.contributor.authorElser, Justin
dc.contributor.authorRaja, Rajani
dc.contributor.authorPriest, Henry D.
dc.contributor.authorBryant Jr., Douglas W.
dc.contributor.authorFox, Samuel E.
dc.contributor.authorGivan, Scott A.
dc.contributor.authorWilhelm, Larry J.
dc.contributor.authorNaithani, Sushma
dc.contributor.authorChristoffels, Alan
dc.contributor.authorSalama, David Y.
dc.contributor.authorCarter, Jade
dc.contributor.authorLopez Girona, Elena
dc.contributor.authorZdepski, Anna
dc.contributor.authorWang, Wenqin
dc.contributor.authorKerstetter, Randall A.
dc.contributor.authorSchwab, Wilfried
dc.contributor.authorKorban, Schuyler S.
dc.contributor.authorDavik, Jahn
dc.contributor.authorMonfort, Amparo
dc.contributor.authorDenoyes-Rothan, Beatrice
dc.contributor.authorArús, Pere
dc.contributor.authorMittler, Ron
dc.contributor.authorFlinn, Barry
dc.contributor.authorAharoni, Asaph
dc.contributor.authorBennetzen, Jeffrey L.
dc.contributor.authorSalzberg, Steven L.
dc.contributor.authorDickerman, Allan W.
dc.contributor.authorVelasco, Riccardo
dc.contributor.authorBorodovsky, Mark
dc.contributor.authorVeilleux, Richard E.
dc.contributor.authorFolta, Kevin M.
dc.contributor.otherProducció Vegetalca
dc.date.accessioned2024-05-10T12:32:09Z
dc.date.available2024-05-10T12:32:09Z
dc.date.issued2010-12-26
dc.identifier.citationShulaev, Vladimir, Daniel J. Sargent, Ross Crowhurst, Todd C. Mockler, Otto Folkerts, Arthur L. Delcher, Pankaj Jaiswal, et al. 2010. “The Genome of Woodland Strawberry (Fragaria Vesca).” Nature Genetics 43 (2): 109–116. doi:10.1038/ng.740ca
dc.identifier.issn1061-4036ca
dc.identifier.urihttp://hdl.handle.net/20.500.12327/2979
dc.description.abstractThe woodland strawberry, Fragaria vesca (2n = 2x = 14), is a versatile experimental plant system. This diminutive herbaceous  perennial has a small genome (240 Mb), is amenable to genetic transformation and shares substantial sequence identity with the  cultivated strawberry (Fragaria × ananassa) and other economically important rosaceous plants. Here we report the draft F. vesca  genome, which was sequenced to ×39 coverage using second-generation technology, assembled de novo and then anchored to the  genetic linkage map into seven pseudochromosomes. This diploid strawberry sequence lacks the large genome duplications seen in  other rosids. Gene prediction modeling identified 34,809 genes, with most being supported by transcriptome mapping. Genes critical  to valuable horticultural traits including flavor, nutritional value and flowering time were identified. Macrosyntenic relationships  between Fragaria and Prunus predict a hypothetical ancestral Rosaceae genome that had nine chromosomes. New phylogenetic  analysis of 154 protein-coding genes suggests that assignment of Populus to Malvidae, rather than Fabidae, is warranted.ca
dc.description.sponsorshipThis work was supported by Roche and 454 Sequencing; the Virginia Bioinformatics Institute; the University of Florida Institute of Food and Agricultural Sciences (IFAS) Dean for Research; the University of Florida Strawberry Breeding Program; The Province of Trento, Italy (to R.V.); Driscoll’s Strawberry Associates; United States Department of Agriculture/Cooperative State Research, Education and Extension Service (USDA/CSREES) Hatch Project VA-135816 (to B.F.); Rutgers Busch Biomedical Funding (to T.P.M.); East Malling Trust (EMT) and Biotechnology and Biological Sciences Research Council (BBSRC) (to D.J.S. and E.L.G.); the Oregon State Agricultural Research Foundation #ARF4435 (to T.C.M.); the Oregon State Computational and Genome Biology Initiative (to T.C.M.); Oregon State University start-up fund (to P.J.); the Center for Genomics and Bioinformatics, supported in part by the METACyt Initiative of Indiana University (to K.M.); US National Institutes of Health (grant HG00783; to M.B.); USDA-CSREES National Research Initiative (NRI) Plant Genome Grant 2008-35300-04411 and New Hampshire Agricultural Experiment Station Project NH00535 (to T.M.D.); and USDA/ARS CRIS #1275- 21000-180-01R (to J.P.S.).ca
dc.format.extent10ca
dc.language.isoengca
dc.publisherNature Researchca
dc.relation.ispartofNature Geneticsca
dc.rightsAttribution-NonCommercial-ShareAlike 4.0 International*
dc.rights.urihttp://creativecommons.org/licenses/by-nc-sa/4.0/*
dc.titleThe genome of woodland strawberry (Fragaria vesca)ca
dc.typeinfo:eu-repo/semantics/articleca
dc.description.versioninfo:eu-repo/semantics/publishedVersionca
dc.rights.accessLevelinfo:eu-repo/semantics/openAccess
dc.embargo.termscapca
dc.subject.udc575ca
dc.subject.udc633ca
dc.identifier.doihttps://doi.org/10.1038/ng.740ca
dc.contributor.groupGenòmica i Biotecnologiaca


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