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Genetically superior European sea bass (Dicentrarchus labrax) and nutritional innovations: Effects of functional feeds on fish immune response, disease resistance, and gut microbiota
(Aquaculture Reports, 2023-09-21)The objective of this study was to determine if selected fish genotypes could benefit from the use of functional additives in novel aqua feed formulations to improve growth performance, gut microbiota, ... -
Genic and non-genic SNP contributions to additive and dominance genetic effects in purebred and crossbred pig traits
(Scientific Reports, 2022-03-09)The present research has estimated the additive and dominance genetic variances of genic and intergenic segments for average daily gain (ADG), backfat thickness (BFT) and pH of the semimembranosus dorsi ... -
GenoDrawing: An Autoencoder Framework for Image Prediction from SNP Markers
(Plant Phenomics, 2023-11-03)Advancements in genome sequencing have facilitated whole genome characterization of numerous plant species, providing an abundance of genotypic data for genomic analysis. Genomic selection and neural ... -
Genome and transcriptome analysis of the Mesoamerican common bean and the role of gene duplications in establishing tissue and temporal specialization of genes
(Genome Biology, 2016-02-25)Background: Legumes are the third largest family of angiosperms and the second most important crop class. Legume genomes have been shaped by extensive large-scale gene duplications, including an ... -
Genome Assembly and Population Sequencing Reveal Three Populations and Signatures of Insecticide Resistance of Tuta absoluta in Latin America
(Genome Biology and Evolution, 2023-04-18)Tuta absoluta is one of the largest threats to tomato agriculture worldwide. Native to South America, it has rapidly spread throughout Europe, Africa, and Asia over the past two decades. To understand ... -
Genome data from a sixteenth century pig illuminate modern breed relationships
(Heredity, 2014-09-10)Ancient DNA (aDNA) provides direct evidence of historical events that have modeled the genome of modern individuals. In livestock, resolving the differences between the effects of initial domestication ... -
Genome encode analyses reveal the basis of convergent evolution of fleshy fruit ripening
(Nature Plants, 2018-09-24)Fleshy fruits using ethylene to regulate ripening have developed multiple times in the history of angiosperms, presenting a clear case of convergent evolution whose molecular basis remains largely ... -
Genome Sequence of the Brown Rot Fungal Pathogen Monilinia laxa
(Genome Announcements, 2018-04-26)Monilinia laxa (phylum Ascomycota) is a plant pathogen responsible for the brown rot blossom blight disease in stone fruit trees of the Rosaceae family, such as apricots. We report here the genome ... -
Genome-enabled phylogenetic and functional reconstruction of an araphid pennate diatom Plagiostriata sp. CCMP470, previously assigned as a radial centric diatom, and its bacterial commensal
(Scientific Reports, 2020-06-10)Diatoms are an ecologically fundamental and highly diverse group of algae, dominating marine primary production in both open-water and coastal communities. The diatoms include both centric species, which ... -
Genome-enabled predictions for fruit weight and quality from repeated records in European peach progenies
(BMC Genomics, 2017-06-06)Background: Highly polygenic traits such as fruit weight, sugar content and acidity strongly influence the agroeconomic value of peach varieties. Genomic Selection (GS) can accelerate peach yield and ... -
Genome-wide analysis of porcine backfat and intramuscular fat fatty acid composition using high-density genotyping and expression data
(BMC Genomics, 2013-12-02)Background: Porcine fatty acid composition is a key factor for quality and nutritive value of pork. Several QTLs for fatty acid composition have been reported in diverse fat tissues. The results obtained ... -
Genome-wide association analysis od senescence-related traits in maize
(International Journal of Molecular Sciences, 2022-12-14)Senescence is a programmed process that involves the destruction of the photosynthesis apparatus and the relocation of nutrients to the grain. Identifying senescence-associated genes is essential to ... -
Genome-wide association study for feed efficiency in collective cage-raised rabbits under full and restricted feeding
(Animal Genetics, 2020-07-22)Feed efficiency (FE) is one of the most economically and environmentally relevant traits in the animal production sector. The objective of this study was to gain knowledge about the genetic control of ... -
Genome-Wide Association Study Singles Out SCD and LEPR as the Two Main Loci Influencing Intramuscular Fat Content and Fatty Acid Composition in Duroc Pigs
(PLoS ONE, 2016-03-29)Intramuscular fat (IMF) content and fatty acid composition affect the organoleptic quality and nutritional value of pork. A genome-wide association study was performed on 138 Duroc pigs genotyped with ... -
Genome-Wide Differentiation of Various Melon Horticultural Groups for Use in GWAS for Fruit Firmness and Construction of a High Resolution Genetic Map
(Frontiers in Plant Science, 2016-09-22)Melon (Cucumis melo L.) is a phenotypically diverse eudicot diploid (2n = 2x = 24) has climacteric and non-climacteric morphotypes and show wide variation for fruit firmness, an important trait for ... -
Genome-wide linkage analysis of QTL for growth and body composition employing the PorcineSNP60 BeadChip
(BMC Genetics, 2012-05-20)Background: The traditional strategy to map QTL is to use linkage analysis employing a limited number of markers. These analyses report wide QTL confidence intervals, making very difficult to identify ... -
GENOMES UNCOUPLED1-independent retrograde signaling targets the ethylene pathway to repress photomorphogenesis
(Plant Physiology, 2020-11-19)When germinating in the light, Arabidopsis (Arabidopsis thaliana) seedlings undergo photomorphogenic development, characterized by short hypocotyls, greening, and expanded cotyledons. Stressed chloroplasts ... -
Genome‐wide detection of copy number variants in European autochthonous and commercial pig breeds by whole‐genome sequencing of DNA pools identified breed‐characterising copy number states
(Animal Genetics, 2020-06-08)In this study, we identified copy number variants (CNVs) in 19 European autochthonous pig breeds and in two commercial breeds (Italian Large White and Italian Duroc) that represent important genetic ... -
Genomic analyses provide insights into peach local adaptation and responses to climate change
(Genome Research, 2021-03-09)The environment has constantly shaped plant genomes, but the genetic bases underlying how plants adapt to environmental influences remain largely unknown. We constructed a high-density genomic variation ... -
Genomic analysis of fruit size and shape traits in apple: unveiling candidate genes through GWAS analysis
(Horticulture Research, 2023-12-19)Genomic tools facilitate the efficient selection of improved genetic materials within a breeding program. Here, we focus on two apple fruit quality traits: shape and size. We utilized data from 11 fruit ...