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Genome-wide analysis of porcine backfat and intramuscular fat fatty acid composition using high-density genotyping and expression data
(BMC Genomics, 2013-12-02)Background: Porcine fatty acid composition is a key factor for quality and nutritive value of pork. Several QTLs for fatty acid composition have been reported in diverse fat tissues. The results obtained ... -
Genome-wide association analysis od senescence-related traits in maize
(International Journal of Molecular Sciences, 2022-12-14)Senescence is a programmed process that involves the destruction of the photosynthesis apparatus and the relocation of nutrients to the grain. Identifying senescence-associated genes is essential to ... -
Genome-wide association study for feed efficiency in collective cage-raised rabbits under full and restricted feeding
(Animal Genetics, 2020-07-22)Feed efficiency (FE) is one of the most economically and environmentally relevant traits in the animal production sector. The objective of this study was to gain knowledge about the genetic control of ... -
Genome-Wide Association Study Singles Out SCD and LEPR as the Two Main Loci Influencing Intramuscular Fat Content and Fatty Acid Composition in Duroc Pigs
(PLoS ONE, 2016-03-29)Intramuscular fat (IMF) content and fatty acid composition affect the organoleptic quality and nutritional value of pork. A genome-wide association study was performed on 138 Duroc pigs genotyped with ... -
Genome-Wide Differentiation of Various Melon Horticultural Groups for Use in GWAS for Fruit Firmness and Construction of a High Resolution Genetic Map
(Frontiers in Plant Science, 2016-09-22)Melon (Cucumis melo L.) is a phenotypically diverse eudicot diploid (2n = 2x = 24) has climacteric and non-climacteric morphotypes and show wide variation for fruit firmness, an important trait for ... -
Genome-wide linkage analysis of QTL for growth and body composition employing the PorcineSNP60 BeadChip
(BMC Genetics, 2012-05-20)Background: The traditional strategy to map QTL is to use linkage analysis employing a limited number of markers. These analyses report wide QTL confidence intervals, making very difficult to identify ... -
GENOMES UNCOUPLED1-independent retrograde signaling targets the ethylene pathway to repress photomorphogenesis
(Plant Physiology, 2020-11-19)When germinating in the light, Arabidopsis (Arabidopsis thaliana) seedlings undergo photomorphogenic development, characterized by short hypocotyls, greening, and expanded cotyledons. Stressed chloroplasts ... -
Genome‐wide detection of copy number variants in European autochthonous and commercial pig breeds by whole‐genome sequencing of DNA pools identified breed‐characterising copy number states
(Animal Genetics, 2020-06-08)In this study, we identified copy number variants (CNVs) in 19 European autochthonous pig breeds and in two commercial breeds (Italian Large White and Italian Duroc) that represent important genetic ... -
Genomic analyses provide insights into peach local adaptation and responses to climate change
(Genome Research, 2021-03-09)The environment has constantly shaped plant genomes, but the genetic bases underlying how plants adapt to environmental influences remain largely unknown. We constructed a high-density genomic variation ... -
Genomic analysis of fruit size and shape traits in apple: unveiling candidate genes through GWAS analysis
(Horticulture Research, 2023-12-19)Genomic tools facilitate the efficient selection of improved genetic materials within a breeding program. Here, we focus on two apple fruit quality traits: shape and size. We utilized data from 11 fruit ... -
Genomic analysis of sewage from 101 countries reveals global landscape of antimicrobial resistance
(Nature Communications, 2022-12-01)Antimicrobial resistance (AMR) is a major threat to global health. Understanding the emergence, evolution, and transmission of individual antibiotic resistance genes (ARGs) is essential to develop ... -
Genomic architecture of carcass and pork traits and their association with immune capacity
(Animal, 2023-11-28)Carcass and pork traits have traditionally been considered of prime importance in pig breeding programmes. However, the changing conditions in modern farming, coupled with antimicrobial resistance issues, ... -
Genomic differentiation among varieties of Iberian pig
(Spanish Journal of Agricultural Research, 2020-02-26)Aim of study: The objective of this study was to identify the autosomal genomic regions associated with genetic differentiation between three commercial strains of Iberian pig. Area of study: Extremadura ... -
Genomic diversity, linkage disequilibrium and selection signatures in European local pig breeds assessed with a high density SNP chip
(Scientific Reports, 2019-09-19)Genetic characterization of local breeds is essential to preserve their genomic variability, to advance conservation policies and to contribute to their promotion and sustainability. Genomic diversity ... -
Genomic Understanding of an Infectious Brain Disease from the Desert
(G3: Genes, Genomes, Genetics, 2018-01-11)Rhinocladiella mackenziei accounts for the majority of fungal brain infections in the Middle East, and is restricted to the arid climate zone between Saudi Arabia and Pakistan. Neurotropic dissemination ... -
Genomics of Ecological Adaptation in Cactophilic Drosophila
(Genome Biology and Evolution, 2014-12-31)Cactophilic Drosophila species provide a valuable model to study gene–environment interactions and ecological adaptation. Drosophila buzzatii and Drosophila mojavensis are two cactophilic species that ... -
Genotype by feeding regimen interactions for slaughter traits in rabbit and expected responses under restricted and full feeding
(Journal of Animal Breeding and Genetics, 2022-05-12)The interaction between the genotype and feeding regimen (G×FR) for slaughter traits was estimated from data corresponding to 2557 animals under full (FF) and 2424 with restricted feeding (RF). Expected ... -
Genotypic variability in radial resistance to water flow in olive roots and its response to temperature variations
(Tree Physiology, 2020-02-06)As radial root resistance (Rp) represents one of the key components of the soil–plant–atmosphere continuum resistance catena modulating water transport, understanding its control is essential for ... -
Genotyping by Sequencing in Almond: SNP Discovery, Linkage Mapping, and Marker Design
(G3, 2017-11-15)In crop plant genetics, linkage maps provide the basis for the mapping of loci that affect important traits and for the selection of markers to be applied in crop improvement. In outcrossing species ... -
Genotyping of Porcine Circovirus 2 (PCV-2) in Vaccinated Pigs Suffering from PCV-2-Systemic Disease between 2009 and 2020 in Spain
(Pathogens, 2021-08-12)Vaccination against porcine circovirus 2 (PCV-2) is a common practice all over the world. Vaccines can prevent PCV-2-systemic disease (PCV-2-SD) outbreaks but not PCV-2 infection, which can be detectable ...