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Gut microbiome and resistome characterization of pigs treated with commonly used post-weaning diarrhea treatments
(BMC, 2024-05-03)
Background The global burden of antimicrobial resistance demands additional measures to ensure the sustainable
and conscious use of antimicrobials. For the swine industry, the post-weaning period is ...
kernInt: A Kernel Framework for Integrating Supervised and Unsupervised Analyses in Spatio-Temporal Metagenomic Datasets
(Frontiers Media, 2021-01-28)
The advent of next-generation sequencing technologies allowed relative quantification of microbiome communities and their spatial and temporal variation. In recent years, supervised learning (i.e., ...
Competing risk analyses of longevity in Duroc sows with a special emphasis on leg conformation
(Elsevier, 2009-01-01)
A competing risk approach was used to evaluate the influence of several factors on culling risk for 587 Duroc sows. Three
different analyses were performed according to whether sow failure was due to ...
Genome‐wide detection of copy number variants in European autochthonous and commercial pig breeds by whole‐genome sequencing of DNA pools identified breed‐characterising copy number states
(Wiley, 2020-06-08)
In this study, we identified copy number variants (CNVs) in 19 European autochthonous pig breeds and in two commercial breeds (Italian Large White and Italian Duroc) that represent important genetic ...
Genomic diversity, linkage disequilibrium and selection signatures in European local pig breeds assessed with a high density SNP chip
(Nature Research, 2019-09-19)
Genetic characterization of local breeds is essential to preserve their genomic variability, to advance conservation policies and to contribute to their promotion and sustainability. Genomic diversity ...