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Exploring deep learning for complex trait genomic prediction in polyploid outcrossing species
(Frontiers Media, 2020-02-06)
Genomic prediction (GP) is the procedure whereby the genetic merits of untested candidates are predicted using genome wide marker information. Although numerous examples of GP exist in plants and animals, ...
cmv1 is a gate for Cucumber mosaic virus transport from bundle sheath cells to phloem in melon
(Wiley Open Access, 2015-12-09)
Cucumber mosaic virus (CMV) has the broadest host range among plant viruses, causing enormous losses in agriculture. In melon, strains of subgroup II are unable to establish a systemic infection in the ...
The apple REFPOP—a reference population for genomics-assisted breeding in apple
(Springer Nature, 2020-11-01)
Breeding of apple is a long-term and costly process due to the time and space requirements for screening selection candidates. Genomics-assisted breeding utilizes genomic and phenotypic information ...
Expression QTL (eQTLs) Analyses Reveal Candidate Genes Associated With Fruit Flesh Softening Rate in Peach [Prunus persica (L.) Batsch]
(Frontiers Media, 2019-12-03)
Significant differences in softening rate have been reported between melting flesh in peach and nectarine varieties. This trait seems to be controlled by several genes. We aimed to identify candidate ...
Comparative QTL analysis in peach ‘Earlygold’ F2 and backcross progenies
(Elsevier, 2021-11-17)
Based on detailed maps, DNA sequences and phenotypic data, there is a great deal of information on the genetics and genomics of ‘Earlygold’, a historical peach cultivar from the US. The F2 between ‘Texas’ ...
Light signals generated by vegetation shade facilitate acclimation to low light in shade-avoider plants
(American Society of Plant Biologists, 2021-05-07)
When growing in search for light, plants can experience continuous or occasional shading by other plants. Plant proximity causes a decrease in the ratio of R to far-red light (low R:FR) due to the ...
Biochemical and genetic implications of the slow ripening phenotype in peach fruit
(Elsevier, 2019-09-14)
The peach [Prunus persica L. (Batsch)] slow ripening (SR) trait is a mutation preventing the normal fruit ripening process. It is determined by a single Mendelian gene (Sr/sr) located on linkage group ...
Peach allergen Pru p 1 content is generally low in fruit but with large variation in different varieties
(Wiley Open Access, 2021-05-14)
Background: Pru p 1 is a major allergen in peach and nectarine, and the different content in varieties may affect the degree of allergic reactions. This study aimed to quantify Pru p 1 levels in ...
Resynthesis: Marker-Based Partial Reconstruction of Elite Genotypes in Clonally-Reproducing Plant Species
(Frontiers Media, 2020-08-07)
We propose a method for marker-based selection of cultivars of clonally-reproducing plant species which keeps the basic genetic architecture of a top-performing cultivar (usually a partly heterozygous ...
Inheritance and QTL analysis of chilling and heat requirements for flowering in an interspecific almond x peach (Texas x Earlygold) F2 population
(Euphytica, 2020-03-04)
Blooming in temperate fruit species is triggered by chilling and heat requirements (CR and HR), with a wide range of requirements within the same species. CR for flower bud dormancy release has become ...