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Determination of the melon chloroplast and mitochondrial genome sequences reveals that the largest reported mitochondrial genome in plants contains a significant amount of DNA having a nuclear origin
(BMC, 2011-08-20)
Background: The melon belongs to the Cucurbitaceae family, whose economic importance among vegetable
crops is second only to Solanaceae. The melon has a small genome size (454 Mb), which makes it ...
PERSEUS: an interactive and intuitive web-based tool for pedigree visualization
(Oxford University Press, 2024-02-03)
Pedigree-based analyses’ prime role is to unravel relationships between individuals in breeding programs and germplasms. This is critical information for decoding the genetics underlying main inherited ...
Whole-Genome Analysis of Diversity and SNP-Major Gene Association in Peach Germplasm
(Public Library of Science, 2015-09-09)
Peach was domesticated in China more than four millennia ago and from there it spread world-wide. Since the middle of the last century, peach breeding programs have been very dynamic generating hundreds ...
An efficient CRISPR-Cas9 enrichment sequencing strategy for characterizing complex and highly duplicated genomic regions. A case study in the Prunus salicina LG3-MYB10 genes cluster
(BMC, 2022-08-27)
Background: Genome complexity is largely linked to diversifcation and crop innovation. Examples of regions with duplicated genes with relevant roles in agricultural traits are found in many crops. In ...
Genomic analysis of fruit size and shape traits in apple: unveiling candidate genes through GWAS analysis
(Oxford University Press, 2023-12-19)
Genomic tools facilitate the efficient selection of improved genetic materials within a breeding program. Here, we focus on two apple fruit quality traits: shape and size. We utilized data from 11 fruit ...
An LTR retrotransposon in the promoter of a PsMYB10.2 gene associated with the regulation of fruit f lesh color in Japanese plum
(Oxford University Press, 2022-09-13)
Japanese plums exhibit wide diversity of fruit coloration. The red to black hues are caused by the accumulation of anthocyanins, while their absence results in yellow, orange or green fruits. In Prunus, ...
A phased genome of the highly heterozygous ‘Texas’ almond uncovers patterns of allele-specific expression linked to heterozygous structural variants
(Oxford University Press, 2024-04-09)
The vast majority of traditional almond varieties are self-incompatible, and the level of variability of the species is very high, resulting in a high-heterozygosity genome. Therefore, information on ...
GenoDrawing: An Autoencoder Framework for Image Prediction from SNP Markers
(American Association for the Advancement of Science; Nanjing Agricultural University, 2023-11-03)
Advancements in genome sequencing have facilitated whole genome characterization of numerous plant species, providing an abundance of genotypic data for genomic analysis. Genomic selection and neural ...
The ethylene-responsive transcription factor ERF024 is a novel regulator of climacteric fruit ripening in melon
(Wiley, 2024-06-20)
Fruit ripening is an essential developmental stage in Angiosperms triggered by hormonal signals such as
ethylene, a major player in climacteric ripening. Melon is a unique crop showing both climacteric ...