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A phased genome of the highly heterozygous ‘Texas’ almond uncovers patterns of allele-specific expression linked to heterozygous structural variants
(Oxford University Press, 2024-04-09)
The vast majority of traditional almond varieties are self-incompatible, and the level of variability of the species is very high, resulting in a high-heterozygosity genome. Therefore, information on ...
Whole-Genome Analysis of Diversity and SNP-Major Gene Association in Peach Germplasm
(Public Library of Science, 2015-09-09)
Peach was domesticated in China more than four millennia ago and from there it spread world-wide. Since the middle of the last century, peach breeding programs have been very dynamic generating hundreds ...
An efficient CRISPR-Cas9 enrichment sequencing strategy for characterizing complex and highly duplicated genomic regions. A case study in the Prunus salicina LG3-MYB10 genes cluster
(BMC, 2022-08-27)
Background: Genome complexity is largely linked to diversifcation and crop innovation. Examples of regions with duplicated genes with relevant roles in agricultural traits are found in many crops. In ...
Biochemical and genetic implications of the slow ripening phenotype in peach fruit
(Elsevier, 2019-09-14)
The peach [Prunus persica L. (Batsch)] slow ripening (SR) trait is a mutation preventing the normal fruit ripening process. It is determined by a single Mendelian gene (Sr/sr) located on linkage group ...
The genome of woodland strawberry (Fragaria vesca)
(Nature Research, 2010-12-26)
The woodland strawberry, Fragaria vesca (2n = 2x = 14), is a versatile experimental plant system. This diminutive herbaceous
perennial has a small genome (240 Mb), is amenable to genetic transformat ...
Survey of over 4, 500 monumental olive trees preserved on-farm in the northeast Iberian Peninsula, their genotyping and characterization
(Elsevier, 2017-12-29)
Inventorying, characterising and conserving on-farm ancient olive trees is a priority for safeguarding their genetic, natural and agricultural value and for protecting ancient genotypes threatened with ...
Decreased levels of Thioredoxin o1 influences stomatal development and aperture but not Photosynthesis under non-stress and saline conditions
(MDPI, 2021-01-21)
Salinity has a negative impact on plant growth, with photosynthesis being downregulated partially due to osmotic effect and enhanced cellular oxidation. Redox signaling contributes to the plant response ...
Exploring large-scale gene coexpression networks in peach (Prunus persica L.): a new tool for predicting gene function
(Oxford University Press, 2024-01-02)
Peach is a model for Prunus genetics and genomics, however, identifying and validating genes associated to peach breeding traits is a
complex task. A gene coexpression network (GCN) capable of capturing ...
Selection of Pru p 3 hypoallergenic peach and nectarine varieties
(Wiley, 2019-11-11)
Peach is an important fruit consumed worldwide. However, it is also one of the most frequently reported allergenic fruits. Component diagnosis of peach allergy indicates Pru p 1, Pru p 2, Pru p 3, Pru ...
Exploring deep learning for complex trait genomic prediction in polyploid outcrossing species
(Frontiers Media, 2020-02-06)
Genomic prediction (GP) is the procedure whereby the genetic merits of untested candidates are predicted using genome wide marker information. Although numerous examples of GP exist in plants and animals, ...