dc.contributor.author | Alioto, Tyler | |
dc.contributor.author | Alexiou, Konstantinos G. | |
dc.contributor.author | Bardil, Amélie | |
dc.contributor.author | Barteri, Fabio | |
dc.contributor.author | Castanera, Raúl | |
dc.contributor.author | Cruz, Fernando | |
dc.contributor.author | Dhingra, Amit | |
dc.contributor.author | Duval, Henri | |
dc.contributor.author | Fernández i Martí, Ángel | |
dc.contributor.author | Frias, Leonor | |
dc.contributor.author | Galán, Beatriz | |
dc.contributor.author | Garcia, José L. | |
dc.contributor.author | Howad, Werner | |
dc.contributor.author | Gómez-Garrido, Jèssica | |
dc.contributor.author | Gut, Marta | |
dc.contributor.author | Julca, Irene | |
dc.contributor.author | Morata, Jordi | |
dc.contributor.author | Puigdomènech, Pere | |
dc.contributor.author | Ribeca, Paolo | |
dc.contributor.author | Rubio Cabetas, María José | |
dc.contributor.author | Vlasova, Anna | |
dc.contributor.author | Wirthensohn, Michelle | |
dc.contributor.author | Garcia-Mas, Jordi | |
dc.contributor.author | Gabaldón, Toni | |
dc.contributor.author | Casacuberta, Josep M. | |
dc.contributor.author | Arús, Pere | |
dc.contributor.other | Producció Vegetal | ca |
dc.date.accessioned | 2019-10-16T11:12:14Z | |
dc.date.available | 2022-03-24T12:00:24Z | |
dc.date.issued | 2019-09-16 | |
dc.identifier.citation | Alioto, Tyler, Konstantinos Alexiou, Amélie Bardil, Fabio Barteri, Raúl Castanera, Fernando Cruz, and Amit Dhingra et al. 2019. "Transposons Played A Major Role In The Diversification Between The Closely Related Almond And Peach Genomes: Results From The Almond Genome Sequence". The Plant Journal. https://onlinelibrary.wiley.com/doi/abs/10.1111/tpj.14538. | ca |
dc.identifier.issn | 1365-313X | ca |
dc.identifier.uri | http://hdl.handle.net/20.500.12327/500 | |
dc.description.abstract | We sequenced the genome of the highly heterozygous almond Prunus dulcis cv. Texas combining short and long‐read sequencing. We obtained a genome assembly totaling 227.6 Mb of the estimated 238 Mb almond genome size, of which 91% is anchored to eight pseudomolecules corresponding to its haploid chromosome complement, and annotated 27,969 protein‐coding genes and 6,747 non‐coding transcripts. By phylogenomic comparison with the genomes of 16 additional close and distant species we estimated that almond and peach (P. persica) diverged around 5.88 Mya. These two genomes are highly syntenic and show a high degree of sequence conservation (20 nucleotide substitutions/kb). However, they also exhibit a high number of presence/absence variants, many attributable to the movement of transposable elements (TEs). TEs have generated an important number of presence/absence variants between almond and peach, and we show that the recent history of TE movement seems markedly different between them. TEs may also be at the origin of important phenotypic differences between both species, and in particular, for the sweet kernel phenotype, a key agronomic and domestication character for almond. Here we show that in sweet almond cultivars, highly methylated TE insertions surround a gene involved in the biosynthesis of amygdalin, whose reduced expression has been correlated with the sweet almond phenotype. Altogether, our results suggest a key role of TEs in the recent history and diversification of almond and its close relative peach. | ca |
dc.format.extent | 18 | ca |
dc.language.iso | eng | ca |
dc.publisher | Wiley | ca |
dc.relation.ispartof | Plant Journal | ca |
dc.rights | Attribution 4.0 International | ca |
dc.rights.uri | http://creativecommons.org/licenses/by/4.0/ | * |
dc.title | Transposons played a major role in the diversification between the closely related almond and peach genomes: Results from the almond genome sequence | ca |
dc.type | info:eu-repo/semantics/article | ca |
dc.description.version | info:eu-repo/semantics/publishedVersion | ca |
dc.rights.accessLevel | info:eu-repo/semantics/openAccess | |
dc.relation.projectID | MINECO-FEDER/Programa Nacional de Proyectos de Investigación Fundamental/AGL2012-40228-C02-01/ES/USO DE LA SECUENCIA GENOMICA PARA LA CARACTERIZACION DE LA VARIABILIDAD INTRACLONAL E INTERESPECIFICA EN MELOCOTONERO Y ALMENDRO/ | ca |
dc.relation.projectID | MINECO-FEDER/Programa Estatal de I+D+I orientada a los retos de la Sociedad/AGL2015-68329-R/ES/IDENTIFICACION Y CARACTERIZACION DE GENES IMPLICADOS EN LA FORMA Y JUGOSIDAD DEL FRUTO EN MELOCOTONERO Y ALMENDRO/ | ca |
dc.relation.projectID | MINECO-FEDER/Programa Estatal de I+D+I orientada a los retos de la Sociedad/AGL2016-78992-R/ES/INPACTO DE LOS TRANSPOSONES EN LA EVOLUCION DE LOS GENOMAS DE PLANTAS CULTIVADAS/ | ca |
dc.relation.projectID | MINECO-FEDER/Programa Estatal de I+D+I orientada a los retos de la Sociedad/RTA2015-00050-00-00/ES/Nuevas estrategias de mejora del melocotonero basadas en marcadores moleculares: introgresión asistida por marcadores y resíntesis/ | ca |
dc.relation.projectID | MINECO/Programa Estatal de fomento de la investigación científica y técnica de excelencia/SEV-2015-0533/ES/ / | ca |
dc.relation.projectID | INIA/Programa Estatal de I+D+I orientada a los retos de la sociedad/RTA2014-00062-00-00/ES/Genómica aplicada a la selección de patrones mejor adaptados al cambio climático y variedades de almendro con alta calidad de fruto/ | ca |
dc.subject.udc | 633 | ca |
dc.identifier.doi | https://doi.org/10.1111/tpj.14538 | ca |
dc.contributor.group | Genòmica i Biotecnologia | ca |