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dc.contributor.authorAlioto, Tyler
dc.contributor.authorAlexiou, Konstantinos G.
dc.contributor.authorBardil, Amélie
dc.contributor.authorBarteri, Fabio
dc.contributor.authorCastanera, Raúl
dc.contributor.authorCruz, Fernando
dc.contributor.authorDhingra, Amit
dc.contributor.authorDuval, Henri
dc.contributor.authorFernández i Martí, Ángel
dc.contributor.authorFrias, Leonor
dc.contributor.authorGalán, Beatriz
dc.contributor.authorGarcia, José L.
dc.contributor.authorHowad, Werner
dc.contributor.authorGómez-Garrido, Jèssica
dc.contributor.authorGut, Marta
dc.contributor.authorJulca, Irene
dc.contributor.authorMorata, Jordi
dc.contributor.authorPuigdomènech, Pere
dc.contributor.authorRibeca, Paolo
dc.contributor.authorRubio Cabetas, María José
dc.contributor.authorVlasova, Anna
dc.contributor.authorWirthensohn, Michelle
dc.contributor.authorGarcia-Mas, Jordi
dc.contributor.authorGabaldón, Toni
dc.contributor.authorCasacuberta, Josep M.
dc.contributor.authorArús, Pere
dc.contributor.otherProducció Vegetalca
dc.date.accessioned2019-10-16T11:12:14Z
dc.date.issued2019-09-16
dc.identifier.citationAlioto, Tyler, Konstantinos Alexiou, Amélie Bardil, Fabio Barteri, Raúl Castanera, Fernando Cruz, and Amit Dhingra et al. 2019. "Transposons Played A Major Role In The Diversification Between The Closely Related Almond And Peach Genomes: Results From The Almond Genome Sequence". The Plant Journal. https://onlinelibrary.wiley.com/doi/abs/10.1111/tpj.14538.ca
dc.identifier.issn1365-313Xca
dc.identifier.urihttp://hdl.handle.net/20.500.12327/500
dc.description.abstractWe sequenced the genome of the highly heterozygous almond Prunus dulcis cv. Texas combining short and long‐read sequencing. We obtained a genome assembly totaling 227.6 Mb of the estimated 238 Mb almond genome size, of which 91% is anchored to eight pseudomolecules corresponding to its haploid chromosome complement, and annotated 27,969 protein‐coding genes and 6,747 non‐coding transcripts. By phylogenomic comparison with the genomes of 16 additional close and distant species we estimated that almond and peach (P. persica) diverged around 5.88 Mya. These two genomes are highly syntenic and show a high degree of sequence conservation (20 nucleotide substitutions/kb). However, they also exhibit a high number of presence/absence variants, many attributable to the movement of transposable elements (TEs). TEs have generated an important number of presence/absence variants between almond and peach, and we show that the recent history of TE movement seems markedly different between them. TEs may also be at the origin of important phenotypic differences between both species, and in particular, for the sweet kernel phenotype, a key agronomic and domestication character for almond. Here we show that in sweet almond cultivars, highly methylated TE insertions surround a gene involved in the biosynthesis of amygdalin, whose reduced expression has been correlated with the sweet almond phenotype. Altogether, our results suggest a key role of TEs in the recent history and diversification of almond and its close relative peach.ca
dc.format.extent18ca
dc.language.isoengca
dc.publisherWileyca
dc.relation.ispartofPlant Journalca
dc.rightsAttribution 4.0 Internationalca
dc.rights.urihttp://creativecommons.org/licenses/by/4.0/*
dc.titleTransposons played a major role in the diversification between the closely related almond and peach genomes: Results from the almond genome sequenceca
dc.typeinfo:eu-repo/semantics/articleca
dc.description.versioninfo:eu-repo/semantics/publishedVersionca
dc.rights.accessLevelinfo:eu-repo/semantics/openAccess
dc.date.embargoEnd2020-09-15T02:00:00Z
dc.embargo.termscapca
dc.relation.projectIDMINECO-FEDER/Programa Nacional de Proyectos de Investigación Fundamental/AGL2012-40228-C02-01/ES/USO DE LA SECUENCIA GENOMICA PARA LA CARACTERIZACION DE LA VARIABILIDAD INTRACLONAL E INTERESPECIFICA EN MELOCOTONERO Y ALMENDRO/ca
dc.relation.projectIDMINECO-FEDER/Programa Estatal de I+D+I orientada a los retos de la Sociedad/AGL2015-68329-R/ES/IDENTIFICACION Y CARACTERIZACION DE GENES IMPLICADOS EN LA FORMA Y JUGOSIDAD DEL FRUTO EN MELOCOTONERO Y ALMENDRO/ca
dc.relation.projectIDMINECO-FEDER/Programa Estatal de I+D+I orientada a los retos de la Sociedad/AGL2016-78992-R/ES/INPACTO DE LOS TRANSPOSONES EN LA EVOLUCION DE LOS GENOMAS DE PLANTAS CULTIVADAS/ca
dc.relation.projectIDMINECO-FEDER/Programa Estatal de I+D+I orientada a los retos de la Sociedad/RTA2015-00050-00-00/ES/Nuevas estrategias de mejora del melocotonero basadas en marcadores moleculares: introgresión asistida por marcadores y resíntesis/ca
dc.relation.projectIDMINECO/ /SEV-2015-0533/ES/ /ca
dc.relation.projectIDINIA/Programa Estatal de I+D+I orientada a los retos de la Sociedad/RTA2014-00062-00-00/ES/Genómica aplicada a la selección de patrones mejor adaptados al cambio climático y variedades de almendro con alta calidad de fruto/ca
dc.subject.udc633ca
dc.identifier.doihttps://doi.org/10.1111/tpj.14538ca
dc.contributor.groupGenòmica i Biotecnologiaca


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