Prunus genetics and applications after de novo genome sequencing: achievements and prospects
Visualitza/Obre
Autor/a
Aranzana, María José
Decroocq, Verónique
Dirlewanger, Elisabeth
Gao, Zhong Shan
Gasic, Ksenija
Iezzoni, Amy
Jung, Sook
Peace, Cameron
Prieto, Humberto
Tao, Ryutaro
Verde, Ignazio
Abbott, Albert G.
Data de publicació
2019-04-05ISSN
2052-7276
Resum
Prior to the availability of whole-genome sequences, our understanding of the structural and functional aspects of Prunus tree genomes was limited mostly to molecular genetic mapping of important traits and development of EST resources. With public release of the peach genome and others that followed, significant advances in our knowledge of Prunus genomes and the genetic underpinnings of important traits ensued. In this review, we highlight key achievements in Prunus genetics and breeding driven by the availability of these whole-genome sequences. Within the structural and evolutionary contexts, we summarize: (1) the current status of Prunus whole-genome sequences; (2) preliminary and ongoing work on the sequence structure and diversity of the genomes; (3) the analyses of Prunus genome evolution driven by natural and man-made selection; and (4) provide insight into haploblocking genomes as
a means to define genome-scale patterns of evolution that can be leveraged for trait selection in pedigree-based Prunus tree breeding programs worldwide. Functionally, we summarize recent and ongoing work that leverages whole-genome sequences to identify and characterize genes controlling 22 agronomically important Prunus traits.
These include phenology, fruit quality, allergens, disease resistance, tree architecture, and self-incompatibility.
Translationally, we explore the application of sequence-based marker-assisted breeding technologies and other sequence-guided biotechnological approaches for Prunus crop improvement. Finally, we present the current status of publically available Prunus genomics and genetics data housed mainly in the Genome Database for Rosaceae (GDR) and its updated functionalities for future bioinformatics-based Prunus genetics and genomics inquiry.
Tipus de document
Article
Versió del document
Versió publicada
Llengua
English
Matèries (CDU)
633 - Cultius i produccions
Pàgines
25
Publicat per
Springer Nature
Publicat a
Horticulture Research
Citació
Aranzana, Maria José, Véronique Decroocq, Elisabeth Dirlewanger, Iban Eduardo, Zhong Shan Gao, Ksenija Gasic, and Amy Iezzoni et al. 2019. "Prunus Genetics And Applications After De Novo Genome Sequencing: Achievements And Prospects". Horticulture Research 6 (1). Springer Nature. doi:10.1038/s41438-019-0140-8.
Número de l'acord de la subvenció
MINECO/Programa Estatal de fomento de la investigación científica y técnica de excelencia/SEV-2015-0533/ES/ /
MINECO-FEDER/Programa Estatal de I+D+I orientada a los retos de la sociedad/AGL2015-68329-R/ES/Identificación y caracterización de genes implicados en la forma y jugosidad del fruto en melocotonero y almendro/ALMELO
MINECO-FEDER/Programa Estatal de I+D+I orientada a los retos de la sociedad/RTA2015-00050-00-00/ES/Nuevas estrategias de mejora del melocotonero basadas en marcadores moleculares: introgresión asistida por marcadores y resíntesis/
Programa
Genòmica i Biotecnologia
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