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A catalog of microbial genes from the bovine rumen unveils a specialized and diverse biomass-degrading environment
(Oxford University Press (OUP), 2020-05-30)
Background
The rumen microbiota provides essential services to its host and, through its role in ruminant production, contributes to human nutrition and food security. A thorough knowledge of the genetic ...
Integrative approach using liver and duodenum RNA-Seq data identifies candidate genes and pathways associated with feed efficiency in pigs
(Springer Nature, 2018-01-11)
This study aims identifying candidate genes and pathways associated with feed efficiency (FE) in pigs. Liver and duodenum transcriptomes of 37 gilts showing high and low residual feed intake (RFI) were ...
Co-expression network analysis predicts a key role of microRNAs in the adaptation of the porcine skeletal muscle to nutrient supply
(BMC, 2020-01-17)
Background
The role of non-coding RNAs in the porcine muscle metabolism is poorly understood, with few studies investigating their expression patterns in response to nutrient supply. Therefore, we aimed ...
On the holobiont ‘predictome’ of immunocompetence in pigs
(BMC, 2023-05-01)
Background
Gut microbial composition plays an important role in numerous traits, including immune response. Integration of host genomic information with microbiome data is a natural step in the prediction ...
Modulatory effect of protein and carotene dietary levels on pig gut microbiota
(Nature Research, 2019-10-10)
In this study we investigated the impact of dietary protein and carotene levels on microbial functions and composition during the last month of purebred fattening Duroc pigs. Fecal microbiota was ...
Genetic parameters and associated genomic regions for global immunocompetence and other health-related traits in pigs
(Nature Research, 2020-10-28)
The inclusion of health-related traits, or functionally associated genetic markers, in pig breeding programs could contribute to produce more robust and disease resistant animals. The aim of the present ...
A pilot RNA-seq study in 40 pietrain ejaculates to characterize the porcine sperm microbiome
(Elsevier, 2020-08-15)
The microbiome plays a key role in homeostasis and health and it has been also linked to fertility and semen quality in several animal species including swine. Despite the more than likely importance ...
Link-HD: a versatile framework to explore and integrate heterogeneous microbial communities
(Oxford University Press, 2019-11-18)
Motivation We present Link-HD, an approach to integrate multiple datasets. Link-HD is a generalization of ‘Structuration des Tableaux A Trois Indices de la Statistique–Analyse Conjointe de Tableaux’, a ...
The value of gut microbiota to predict feed efficiency and growth of rabbits under different feeding regimes
(Nature Research, 2021-09-30)
Gut microbiota plays an important role in nutrient absorption and could impact rabbit feed efciency.
This study aims at investigating such impact by evaluating the value added by microbial information
for ...
Whole-genome sequencing reveals insights into the adaptation of French Charolais cattle to Cuban tropical conditions
(BMC, 2021-01-04)
Background: In the early 20th century, Cuban farmers imported Charolais cattle (CHFR) directly from France. These
animals are now known as Chacuba (CHCU) and have become adapted to the rough environmental ...