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Gut microbiome and resistome characterization of pigs treated with commonly used post-weaning diarrhea treatments
(BMC, 2024-05-03)
Background The global burden of antimicrobial resistance demands additional measures to ensure the sustainable
and conscious use of antimicrobials. For the swine industry, the post-weaning period is ...
kernInt: A Kernel Framework for Integrating Supervised and Unsupervised Analyses in Spatio-Temporal Metagenomic Datasets
(Frontiers Media, 2021-01-28)
The advent of next-generation sequencing technologies allowed relative quantification of microbiome communities and their spatial and temporal variation. In recent years, supervised learning (i.e., ...
Competing risk analyses of longevity in Duroc sows with a special emphasis on leg conformation
(Elsevier, 2009-01-01)
A competing risk approach was used to evaluate the influence of several factors on culling risk for 587 Duroc sows. Three
different analyses were performed according to whether sow failure was due to ...
Early socialization and environmental enrichment of lactating piglets affects the caecal microbiota and metabolomic response after weaning
(Nature Research, 2021-03-17)
The aim of this study was to determine the possible impact of early socialization and an enriched neonatal environment to improve adaptation of piglets to weaning. We hypothesized that changes in the ...
Understanding host-microbiota interactions in the commercial piglet around weaning
(Nature Research, 2021-12-06)
Weaning is a critical period in the life of pigs with repercussions on their health and welfare and on the
economy of the swine industry. This study aimed to assess the efect of the commercial early ...
Indirect genetic effect model using feeding behaviour traits to define the degree of interaction between mates: an implementation in pigs growth rate
(Cambridge University Press, 2018-06-06)
An alternative implementation of the animal model including indirect genetic effect (IGE) is presented considering pair-mate-specific interaction degrees to improve the performance of the model. Data ...
A systems biology framework integrating GWAS and RNA-seq to shed light on the molecular basis of sperm quality in swine
(BMC, 2020-12-08)
Background
Genetic pressure in animal breeding is sparking the interest of breeders for selecting elite boars with higher sperm quality to optimize ejaculate doses and fertility rates. However, the ...
Leveraging host-genetics and gut microbiota to determine immunocompetence in pigs
(BMC, 2021-10-24)
Background: The gut microbiota infuences host performance playing a relevant role in homeostasis and function of
the immune system. The aim of the present work was to identify microbial signatures ...
A gene co-association network regulating gut microbial communities in a Duroc pig population
(BMC, 2021-02-21)
Background. Analyses of gut microbiome composition in livestock species have shown its potential to contribute to the regulation of complex phenotypes. However, little is known about the host genetic ...
Indel detection from Whole Genome Sequencing data and association with lipid metabolism in pigs
(Public Library of Science, 2019-06-27)
The selection in commercial swine breeds for meat-production efficiency has been increasing among the past decades, reducing the intramuscular fat content, which has changed the sensorial and technological ...