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Metadata standards and practical guidelines for specimen and DNA curation when building barcode reference libraries for aquatic life
(Pensoft Publishers, 2021-02-26)
DNA barcoding and metabarcoding is increasingly used to effectively and precisely assess and monitor biodiversity in aquatic ecosystems. As these methods rely on data availability and quality of barcode ...
Revisions to the classification, nomenclature, and diversity of Eukaryotes
(Wiley, 2019-01-19)
This revision of the classification of eukaryotes follows that of Adl et al., 2012 [J. Euk. Microbiol. 59(5)] and retains an emphasis on protists. Changes since have improved the resolution of many nodes ...
Complete mitochondrial genome of a rare diatom (Bacillariophyta) Proschkinia and its phylogenetic and taxonomic implications
(Taylor & Francis Open Access, 2018-11-25)
We obtained the complete mitogenome of Proschkinia sp. strain SZCZR1824, a strain belonging to a poorly known diatom genus with no previous molecular data. This genome is 48,863 bp long, with two group ...
Genome-enabled phylogenetic and functional reconstruction of an araphid pennate diatom Plagiostriata sp. CCMP470, previously assigned as a radial centric diatom, and its bacterial commensal
(Springer Nature, 2020-06-10)
Diatoms are an ecologically fundamental and highly diverse group of algae, dominating marine primary production in both open-water and coastal communities. The diatoms include both centric species, which ...
Ripe for reassessment: a synthesis of available molecular data for the speciose diatom family Bacillariaceae
(Elsevier, 2020-10-13)
The Bacillariaceae is a very species-rich family of raphid diatoms and includes the large and taxonomically difficult genus Nitzschia, whose species are often small-celled and finely structured and have ...
Diat.barcode, an open-access curated barcode library for diatoms
(Nature Research, 2019-10-22)
Diatoms (Bacillariophyta) are ubiquitous microalgae which produce a siliceous exoskeleton and which make a major contribution to the productivity of oceans and freshwaters. They display a huge diversity, ...
Inheritance of spheroid body and plastid in the raphid diatom Epithemia (Bacillariophyta) during sexual reproduction
(Taylor and Francis, 2021-04-21)
Diatoms belonging to the family Epithemiaceae have endosymbiont ‘spheroid bodies’, which have received attention as a model to provide new insights into the early stages of organelle evolution. Uniparental ...
Homothallism, morphology and phylogenetic position of a new species of Sellaphora (Bacillariophyta), S. pausariae
(National Botanic Garden of Belgium and Royal Botanical Society of Belgium, 2019-07-09)
Background and aims – The eutrophic Blackford Pond in Edinburgh has already provided the holotypes of six other Sellaphora species. A further undescribed species is present and requires description and ...
Assessment of marine benthic diatom communities: insights from a combined morphological–metabarcoding approach in Mediterranean shallow coastal waters
(Elsevier, 2022-01-18)
We investigated the advantages and disadvantages of light microscope (LM)-based identifications and DNA metabarcoding, based on a 312-bp rbcL marker, for examining benthic diatom communities from ...
DNA metabarcoding reveals differences in distribution patterns and ecological preferences among genetic variants within some key freshwater diatom species
(Elsevier, 2021-07-20)
Our study evaluates differences in the distribution and ecology of genetic variants within several ecologically important diatom species that are also key for Water Framework Directive monitoring of ...