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DNA metabarcoding reveals differences in distribution patterns and ecological preferences among genetic variants within some key freshwater diatom species
(Elsevier, 2021-07-20)
Our study evaluates differences in the distribution and ecology of genetic variants within several ecologically important diatom species that are also key for Water Framework Directive monitoring of ...
Assessment of marine benthic diatom communities: insights from a combined morphological–metabarcoding approach in Mediterranean shallow coastal waters
(Elsevier, 2022-01-18)
We investigated the advantages and disadvantages of light microscope (LM)-based identifications and DNA metabarcoding, based on a 312-bp rbcL marker, for examining benthic diatom communities from ...
Revisions to the classification, nomenclature, and diversity of Eukaryotes
(Wiley, 2019-01-19)
This revision of the classification of eukaryotes follows that of Adl et al., 2012 [J. Euk. Microbiol. 59(5)] and retains an emphasis on protists. Changes since have improved the resolution of many nodes ...
Genome-enabled phylogenetic and functional reconstruction of an araphid pennate diatom Plagiostriata sp. CCMP470, previously assigned as a radial centric diatom, and its bacterial commensal
(Springer Nature, 2020-06-10)
Diatoms are an ecologically fundamental and highly diverse group of algae, dominating marine primary production in both open-water and coastal communities. The diatoms include both centric species, which ...
Complete mitochondrial genome of a rare diatom (Bacillariophyta) Proschkinia and its phylogenetic and taxonomic implications
(Taylor & Francis Open Access, 2018-11-25)
We obtained the complete mitogenome of Proschkinia sp. strain SZCZR1824, a strain belonging to a poorly known diatom genus with no previous molecular data. This genome is 48,863 bp long, with two group ...
Metadata standards and practical guidelines for specimen and DNA curation when building barcode reference libraries for aquatic life
(Pensoft Publishers, 2021-02-26)
DNA barcoding and metabarcoding is increasingly used to effectively and precisely assess and monitor biodiversity in aquatic ecosystems. As these methods rely on data availability and quality of barcode ...
Homothallism, morphology and phylogenetic position of a new species of Sellaphora (Bacillariophyta), S. pausariae
(National Botanic Garden of Belgium and Royal Botanical Society of Belgium, 2019-07-09)
Background and aims – The eutrophic Blackford Pond in Edinburgh has already provided the holotypes of six other Sellaphora species. A further undescribed species is present and requires description and ...
Ripe for reassessment: a synthesis of available molecular data for the speciose diatom family Bacillariaceae
(Elsevier, 2020-10-13)
The Bacillariaceae is a very species-rich family of raphid diatoms and includes the large and taxonomically difficult genus Nitzschia, whose species are often small-celled and finely structured and have ...
Phylotranscriptomics reveals the reticulate evolutionary history of a widespread diatom species complex
(Wiley, 2022-07-21)
In contrast to surveys based on a few genes that often provide limited taxonomic resolution, transcriptomes provide a wealth of genomic loci that can resolve relationships among taxonomically challenging ...
Nitzschia fenestralis: A new diatom species abundant in the Holocene sediments of an eastern African crater lake
(Czech Phycological Society, 2020-02-18)
Nitzschia is common in the phytoplankton of several East African lakes. A new species, Nitzschia fenestralis, sp. nov. D. Grady, D.G. Mann et Trobajo was encountered at numerous depths in a 16 m sediment ...